Click here to switch to the map view.

The map label for this gene is slyA [H]

Identifier: 154245255

GI number: 154245255

Start: 1503347

End: 1503826

Strand: Reverse

Name: slyA [H]

Synonym: Xaut_1307

Alternate gene names: 154245255

Gene position: 1503826-1503347 (Counterclockwise)

Preceding gene: 154245257

Following gene: 154245254

Centisome position: 28.33

GC content: 72.08

Gene sequence:

>480_bases
ATGCCCGATCCCATCCCCACCCCCGACCCCATCTCCCCCCGCGAGCGCTTCGGCATGCTGTTCGTCATGGTGGCGCGCCA
CTGGCGCAGCGCGCTGGATGCGAGCCTTGCCTGCCGGGGCCTCTCGGACGCCAGCTGGAGCCCCCTCCTCCACATCGGCC
GTTCCGGCGGCGGCCTGTCGCAGAAGGAGCTGGCGGCGCGGGTCGGCATCGACGGGTCGAGCCTCGTGCGCCTGCTCGAC
ATCCTCGCCGCCAAGGGGCTGATCGAGCGCCGGCAGGACCCGGCCGACCGGCGGGCCAACCTGCTGTTCCTGACCCCGGC
TGGCCGCGAGGCCATGGCCGACATCCAGCGCCTCCTGAACACCATCGAGGCGCGGATGCTGGCGGATTTCGACGACGCCG
AGATGGCGGCCATGACAACGGCCCTGGAGCGGATCGACACCCGCATCCGGGCGCTGCGCCACGGCGGAGAAAAGCCGTGA

Upstream 100 bases:

>100_bases
GGCATGGCCCCGTCACGTCATGCACGAGAGACAGGTAGCGCAGCGGCGCGGGCTCAGCTATATAGTTTGAATTCAAATTA
TTTGAACACTCATAACTCCC

Downstream 100 bases:

>100_bases
GCGCCCCCGCCACCCTGGAGCGGCTTGGCTTCGACCCCCTCCGCCTGAACTTCACCCTGCGCACCGCGCTCGCGGCCTGC
TGCGCGCTCCTTGTCGCGTG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MPDPIPTPDPISPRERFGMLFVMVARHWRSALDASLACRGLSDASWSPLLHIGRSGGGLSQKELAARVGIDGSSLVRLLD
ILAAKGLIERRQDPADRRANLLFLTPAGREAMADIQRLLNTIEARMLADFDDAEMAAMTTALERIDTRIRALRHGGEKP

Sequences:

>Translated_159_residues
MPDPIPTPDPISPRERFGMLFVMVARHWRSALDASLACRGLSDASWSPLLHIGRSGGGLSQKELAARVGIDGSSLVRLLD
ILAAKGLIERRQDPADRRANLLFLTPAGREAMADIQRLLNTIEARMLADFDDAEMAAMTTALERIDTRIRALRHGGEKP
>Mature_158_residues
PDPIPTPDPISPRERFGMLFVMVARHWRSALDASLACRGLSDASWSPLLHIGRSGGGLSQKELAARVGIDGSSLVRLLDI
LAAKGLIERRQDPADRRANLLFLTPAGREAMADIQRLLNTIEARMLADFDDAEMAAMTTALERIDTRIRALRHGGEKP

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=133, Percent_Identity=30.8270676691729, Blast_Score=66, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17436; Mature: 17305

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDPIPTPDPISPRERFGMLFVMVARHWRSALDASLACRGLSDASWSPLLHIGRSGGGLS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCC
QKELAARVGIDGSSLVRLLDILAAKGLIERRQDPADRRANLLFLTPAGREAMADIQRLLN
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCHHHHHHHHHHHH
TIEARMLADFDDAEMAAMTTALERIDTRIRALRHGGEKP
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PDPIPTPDPISPRERFGMLFVMVARHWRSALDASLACRGLSDASWSPLLHIGRSGGGLS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCC
QKELAARVGIDGSSLVRLLDILAAKGLIERRQDPADRRANLLFLTPAGREAMADIQRLLN
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCHHHHHHHHHHHH
TIEARMLADFDDAEMAAMTTALERIDTRIRALRHGGEKP
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA