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The map label for this gene is pecT [H]

Identifier: 154245116

GI number: 154245116

Start: 1344866

End: 1345741

Strand: Reverse

Name: pecT [H]

Synonym: Xaut_1168

Alternate gene names: 154245116

Gene position: 1345741-1344866 (Counterclockwise)

Preceding gene: 154245118

Following gene: 154245115

Centisome position: 25.35

GC content: 71.69

Gene sequence:

>876_bases
ATGATCCGCAACCTCGATCTCGATCTCCTGCGCAGCTTCGCGGCGGTGGCCGATCTGGGCTCCATCTCGGCGGCCGCGCG
CAAGGTGGGGCGCAGCCAGTCGGCCGTGAGCCTGCAGATGGACCGGCTGGCTGAATCCCTCGGCTTCCAGGTGCTGGAAC
GGCGCGGCCGTGCGGTCTCCCCCACCCCGCGCGGCGGCGCCTTCCTGGAGGATGCCCGCCGTCTCCTCGACCTTAACGAC
CGGGTGCTCACCCAGCACGTCCACGGCGCCTTCGCCCAGCCGCTACGGCTCGGCTTCGTGCAGGACGTGGGCGAAGACGT
GATGAAGCGCATCCTCTATCGCCTCGCGGCCAGCTTTCCCCAGGCCCCCATCACGGTGCGCGTGTGCACCACCGTCACCA
TGCTGGACAAGCTGAAAGCGGAGGACCTCGACATCGCGGTGGGCCTGCGCAACGAGAGCGACCTGCCCACCACCCTGCTG
CTGCGCGAACCCATGGTGTGGATCGCCGCCCGCCACCTGCGCCTCGACCGGGAGGCCCCGGTGCCGCTGGTGCTGTTCGA
GAACCCCTGCATCTGCCGCAGCGCCGCCATCTCGGCGCTCAATGCGGCGGGCCGGGCCTTCCGCATCGCCTTCACCAGCC
CCAGCCTGCCAGGGCTGATGGCGGCGGTGGGCGCGGGCATCGGCGTCACCGTGCGCTCGCCGCGCGCGCTGAGGCCCGAC
CTCGCGGTGGTGGCCGACCTCGACCGCGCCAGCCTGCCGGACATGGAGTTCGTGCTCTATGGCCGCCCCGGCAGCCGCCC
GCCGGCCCTCGCCAAGGTGGAGGAGATCCTGCTGGAGGAGCTGCGCCGCGAGCATCCGCTCTACGCCGTGGCGTGA

Upstream 100 bases:

>100_bases
GCATGAGGGTCTCCATCGGGTTGATGGCGTCACCCTACGCCGCGCCTTCGCATGAGAAAATTTGAATTCTAAAATCCGAG
AAATCGGATATTCTCATATC

Downstream 100 bases:

>100_bases
CGCCGGCTGGACATCGCCGGGGGGAGCCCCCACCTTTTCCTTGTTCGTTGACGGCCCGGGGGGTCTGCCCCTTTTCCGCC
CCGGGGGAGATTGCCGCACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MIRNLDLDLLRSFAAVADLGSISAAARKVGRSQSAVSLQMDRLAESLGFQVLERRGRAVSPTPRGGAFLEDARRLLDLND
RVLTQHVHGAFAQPLRLGFVQDVGEDVMKRILYRLAASFPQAPITVRVCTTVTMLDKLKAEDLDIAVGLRNESDLPTTLL
LREPMVWIAARHLRLDREAPVPLVLFENPCICRSAAISALNAAGRAFRIAFTSPSLPGLMAAVGAGIGVTVRSPRALRPD
LAVVADLDRASLPDMEFVLYGRPGSRPPALAKVEEILLEELRREHPLYAVA

Sequences:

>Translated_291_residues
MIRNLDLDLLRSFAAVADLGSISAAARKVGRSQSAVSLQMDRLAESLGFQVLERRGRAVSPTPRGGAFLEDARRLLDLND
RVLTQHVHGAFAQPLRLGFVQDVGEDVMKRILYRLAASFPQAPITVRVCTTVTMLDKLKAEDLDIAVGLRNESDLPTTLL
LREPMVWIAARHLRLDREAPVPLVLFENPCICRSAAISALNAAGRAFRIAFTSPSLPGLMAAVGAGIGVTVRSPRALRPD
LAVVADLDRASLPDMEFVLYGRPGSRPPALAKVEEILLEELRREHPLYAVA
>Mature_291_residues
MIRNLDLDLLRSFAAVADLGSISAAARKVGRSQSAVSLQMDRLAESLGFQVLERRGRAVSPTPRGGAFLEDARRLLDLND
RVLTQHVHGAFAQPLRLGFVQDVGEDVMKRILYRLAASFPQAPITVRVCTTVTMLDKLKAEDLDIAVGLRNESDLPTTLL
LREPMVWIAARHLRLDREAPVPLVLFENPCICRSAAISALNAAGRAFRIAFTSPSLPGLMAAVGAGIGVTVRSPRALRPD
LAVVADLDRASLPDMEFVLYGRPGSRPPALAKVEEILLEELRREHPLYAVA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=266, Percent_Identity=35.3383458646617, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31724; Mature: 31724

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRNLDLDLLRSFAAVADLGSISAAARKVGRSQSAVSLQMDRLAESLGFQVLERRGRAVS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PTPRGGAFLEDARRLLDLNDRVLTQHVHGAFAQPLRLGFVQDVGEDVMKRILYRLAASFP
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QAPITVRVCTTVTMLDKLKAEDLDIAVGLRNESDLPTTLLLREPMVWIAARHLRLDREAP
CCCEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCC
VPLVLFENPCICRSAAISALNAAGRAFRIAFTSPSLPGLMAAVGAGIGVTVRSPRALRPD
CCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCC
LAVVADLDRASLPDMEFVLYGRPGSRPPALAKVEEILLEELRREHPLYAVA
HHEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECC
>Mature Secondary Structure
MIRNLDLDLLRSFAAVADLGSISAAARKVGRSQSAVSLQMDRLAESLGFQVLERRGRAVS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PTPRGGAFLEDARRLLDLNDRVLTQHVHGAFAQPLRLGFVQDVGEDVMKRILYRLAASFP
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QAPITVRVCTTVTMLDKLKAEDLDIAVGLRNESDLPTTLLLREPMVWIAARHLRLDREAP
CCCEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCC
VPLVLFENPCICRSAAISALNAAGRAFRIAFTSPSLPGLMAAVGAGIGVTVRSPRALRPD
CCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCC
LAVVADLDRASLPDMEFVLYGRPGSRPPALAKVEEILLEELRREHPLYAVA
HHEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]