Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 154245035

GI number: 154245035

Start: 1250110

End: 1250718

Strand: Reverse

Name: pdtaR [H]

Synonym: Xaut_1086

Alternate gene names: 154245035

Gene position: 1250718-1250110 (Counterclockwise)

Preceding gene: 154245037

Following gene: 154245034

Centisome position: 23.56

GC content: 57.96

Gene sequence:

>609_bases
ATGGCCGAGCGTTCACTGAGTATTCTGGTGATTGACGAGAACCCTATCCGAGCCTCGATCATCGAGGCGGGATTGCACGA
CTCCGGTCACCGCAACGTCAGGATCGAGACCGAGATCAGGGGCATTGCCGCCAAGATTTCGGAATTCTCGCCCGAGGTCA
TCTTCATCAACCTTGGAAATCCAAATCGCGACATGCTGGAAGACATGTTCCAGCTCTCGCGCGTCGTCAAACGCCCCATC
GCCATGTTCGTCGACCGTGCCGACAAGGCTTCAATTGAACGCGCCGTCGATGCCGGCGTTTCGGCCTATATCGTGGACGG
CCTGAAGAAGGAGCGCGTGAAGCCCATTCTCGACATGGCGATCAGCCGTTTCAATGCATTCACGAGCATGCAGCGCGAGC
TGGAAGAAGCGCGCAACGAGCTTGAGAACCGACGGACGATCGAGCGGGCAAAGGGCATCATCATGAACGCTCGCAACCTT
TCAGAGCCGGAGGCCTATGCGCTGCTCCGCAAAACGGCGATGAACCGAAACCGCAAGATCGTCGACATTGCGCACGGGCT
CATCATCGCCGCGACTCTGCTGGACCCGACATCGGAGCGACAGAAATGA

Upstream 100 bases:

>100_bases
GCGTGCGCCACCGAAGTGTCGGCCCCGACGATGGGGGCAATATCGAAAAATATCCGCCCGGCGCATTGAACAATGGGTCG
CCCCCTCCCTACGATGGGCC

Downstream 100 bases:

>100_bases
CCGCAGCCTATGAAATCACGGCCGGCTTCATTCCTTTGCTCGATAGCGCACTGCTGGTCGCGGCGTCGGCCAAGGGCTTC
GCGGAAGCCGAGAATGTCGC

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAERSLSILVIDENPIRASIIEAGLHDSGHRNVRIETEIRGIAAKISEFSPEVIFINLGNPNRDMLEDMFQLSRVVKRPI
AMFVDRADKASIERAVDAGVSAYIVDGLKKERVKPILDMAISRFNAFTSMQRELEEARNELENRRTIERAKGIIMNARNL
SEPEAYALLRKTAMNRNRKIVDIAHGLIIAATLLDPTSERQK

Sequences:

>Translated_202_residues
MAERSLSILVIDENPIRASIIEAGLHDSGHRNVRIETEIRGIAAKISEFSPEVIFINLGNPNRDMLEDMFQLSRVVKRPI
AMFVDRADKASIERAVDAGVSAYIVDGLKKERVKPILDMAISRFNAFTSMQRELEEARNELENRRTIERAKGIIMNARNL
SEPEAYALLRKTAMNRNRKIVDIAHGLIIAATLLDPTSERQK
>Mature_201_residues
AERSLSILVIDENPIRASIIEAGLHDSGHRNVRIETEIRGIAAKISEFSPEVIFINLGNPNRDMLEDMFQLSRVVKRPIA
MFVDRADKASIERAVDAGVSAYIVDGLKKERVKPILDMAISRFNAFTSMQRELEEARNELENRRTIERAKGIIMNARNLS
EPEAYALLRKTAMNRNRKIVDIAHGLIIAATLLDPTSERQK

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22822; Mature: 22691

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERSLSILVIDENPIRASIIEAGLHDSGHRNVRIETEIRGIAAKISEFSPEVIFINLGN
CCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEECCC
PNRDMLEDMFQLSRVVKRPIAMFVDRADKASIERAVDAGVSAYIVDGLKKERVKPILDMA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ISRFNAFTSMQRELEEARNELENRRTIERAKGIIMNARNLSEPEAYALLRKTAMNRNRKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCCH
VDIAHGLIIAATLLDPTSERQK
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AERSLSILVIDENPIRASIIEAGLHDSGHRNVRIETEIRGIAAKISEFSPEVIFINLGN
CCCCEEEEEECCCCCHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEECCC
PNRDMLEDMFQLSRVVKRPIAMFVDRADKASIERAVDAGVSAYIVDGLKKERVKPILDMA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ISRFNAFTSMQRELEEARNELENRRTIERAKGIIMNARNLSEPEAYALLRKTAMNRNRKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCCH
VDIAHGLIIAATLLDPTSERQK
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]