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The map label for this gene is rpoE [H]

Identifier: 154244926

GI number: 154244926

Start: 1092868

End: 1093476

Strand: Direct

Name: rpoE [H]

Synonym: Xaut_0976

Alternate gene names: 154244926

Gene position: 1092868-1093476 (Clockwise)

Preceding gene: 154244925

Following gene: 154244927

Centisome position: 20.59

GC content: 71.76

Gene sequence:

>609_bases
ATGGCGGAACTCTCGGCCCGCCATGGGCACGCTGCGCCTGCCGCCGATCGCGGGCACGATGGGGCCGCGGCGGCGCGGTT
CGACGCGCTGATCCTGCCGCACCTCGACGCAGCCTATAACCTCGCGCGCTATCTGAGCCGGGATCCGGATGCGGCGCAGG
ACATCGTGCAGGACGCGTTTCTGCGCGCCTATCGCAGCTTCGCCGACTTCCGCGGCCTGAGCCCGCGGGCGTGGCTGCTC
GCCATCGTGCGCAATTGCCATGCGACATGGCGGATGCAGCATCGGCGGGCGCCGCAGTCCGCCCCCCTGCCGCATGGCGA
CGGAGAGGCGCCGGAGGATGCGGCCAGTCTTCTTGTTGACGGGGACACGCCCGAGAGCCTTCTGCTGCGCCGCACCGAGG
CGGAAGCCGTGCGCGCGCTGCTGGAACACCTTCCCGAGCCGCTGCGTGAGGTGCTGGTGCTGCGCGAGCTGGACGAATTG
TCCTACCGCGAGATCGCGGAGGTGGCGGGGGTGCCGGTGGGGACGGTGATGTCGCGCCTGTCCCGCGCGCGCCGTCTGTT
CGCCGACCTCTGGTCGCGCGCCGCACCTGACGGGGAGGCGGTCCCATGA

Upstream 100 bases:

>100_bases
CGTATTTTTCGTCCGGGCCGGCGGATGGCGGGCTTTCGCCTTTAGCCTCGCCGCCCTGGTGTTTCGCGTCGCCCGCATCC
GCTCCGGTCAGGCGCATCCC

Downstream 100 bases:

>100_bases
GCACGCCTGTTCCAGAAGCCGGGCCCTGCGCCGCATGGGAGGGGCTGCTGAACGGCTACCTCGATGGCGAGCTGGATGCC
GCCCATGTGATGGACGTGGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAELSARHGHAAPAADRGHDGAAAARFDALILPHLDAAYNLARYLSRDPDAAQDIVQDAFLRAYRSFADFRGLSPRAWLL
AIVRNCHATWRMQHRRAPQSAPLPHGDGEAPEDAASLLVDGDTPESLLLRRTEAEAVRALLEHLPEPLREVLVLRELDEL
SYREIAEVAGVPVGTVMSRLSRARRLFADLWSRAAPDGEAVP

Sequences:

>Translated_202_residues
MAELSARHGHAAPAADRGHDGAAAARFDALILPHLDAAYNLARYLSRDPDAAQDIVQDAFLRAYRSFADFRGLSPRAWLL
AIVRNCHATWRMQHRRAPQSAPLPHGDGEAPEDAASLLVDGDTPESLLLRRTEAEAVRALLEHLPEPLREVLVLRELDEL
SYREIAEVAGVPVGTVMSRLSRARRLFADLWSRAAPDGEAVP
>Mature_201_residues
AELSARHGHAAPAADRGHDGAAAARFDALILPHLDAAYNLARYLSRDPDAAQDIVQDAFLRAYRSFADFRGLSPRAWLLA
IVRNCHATWRMQHRRAPQSAPLPHGDGEAPEDAASLLVDGDTPESLLLRRTEAEAVRALLEHLPEPLREVLVLRELDELS
YREIAEVAGVPVGTVMSRLSRARRLFADLWSRAAPDGEAVP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=132, Percent_Identity=40.9090909090909, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22218; Mature: 22087

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELSARHGHAAPAADRGHDGAAAARFDALILPHLDAAYNLARYLSRDPDAAQDIVQDAF
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LRAYRSFADFRGLSPRAWLLAIVRNCHATWRMQHRRAPQSAPLPHGDGEAPEDAASLLVD
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCC
GDTPESLLLRRTEAEAVRALLEHLPEPLREVLVLRELDELSYREIAEVAGVPVGTVMSRL
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
SRARRLFADLWSRAAPDGEAVP
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AELSARHGHAAPAADRGHDGAAAARFDALILPHLDAAYNLARYLSRDPDAAQDIVQDAF
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LRAYRSFADFRGLSPRAWLLAIVRNCHATWRMQHRRAPQSAPLPHGDGEAPEDAASLLVD
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCC
GDTPESLLLRRTEAEAVRALLEHLPEPLREVLVLRELDELSYREIAEVAGVPVGTVMSRL
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
SRARRLFADLWSRAAPDGEAVP
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]