| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is 154244830
Identifier: 154244830
GI number: 154244830
Start: 980371
End: 981747
Strand: Reverse
Name: 154244830
Synonym: Xaut_0880
Alternate gene names: NA
Gene position: 981747-980371 (Counterclockwise)
Preceding gene: 154244832
Following gene: 154244821
Centisome position: 18.49
GC content: 69.06
Gene sequence:
>1377_bases ATGAATCTCTATGCCAAGCTCAAGGCACGCGCCGCCGCCGGCAGGCCGGTGCGGGTCGGCGTCATCGGCGCCGGCAAGTT CGGCTCCATGTTCCTGTCCCAGGGGCCGCGCACCCCCGGCCTCCACATCGTGGGTATCGCCGATCTCGACGTGAACCGCG CCCGAGCCTCCTGCGCCCGCGTGGACTGGCCGGCGGAGCGCTACGCCGCGCGCTCGTTCGCGGAGGCCATGGCCAGCGGC AGCACCTTCATCACCGACGATGCCGAGGCGCTGATCGCCACCGGCGGCATGGATGTCATCGTCGAGGCCACCGGCAATCC GGGCGCCGGCATCCGCCACGCTTTGCTGTGCTGCAAGCATGGCCGCCACATCGTGATGGTGAACGTGGAGGCCGACGCCC TCGCCGGCCCGCTGCTGGCCCGGCATGCGGCGGCGGCCGGCATCGTCTATTCCTTCGCCTATGGCGACCAGCCCGCCCTC ATCGCCGAGATCGTGGACTGGGCCCGCACCGCCGGCCTTGAGGTGATCTGCGCCGGCAAGGGTACGAAGTATTTGCCCGC CTACCACCAGTCGACGCCAGAGACGGTGTGGGGCCATTACGGCTTCAGCCCGGAAGAGGTGGCGGGGGGCGATTTCAACG CCCAGATGTTCAACTCCTTTCTGGACGGCACCAAATCGGCGCTGGAAATGGCGGCGGTGGCCAATGGCTGCGATCTGGAG CCGGCCGCTGACGGCCTCAGCTTCCCGCCCTGCGGCAAGGATGACCTGCCCACCATCCTGCGCCCGCGCGCCGATGGCGG CATCCTCCCCCACAAGGGCACGGTGGAAGTGGTCTCCTCGCTGGAGCGCGACGGCCGCCCGGTGTTCCGGGATCTCAGGT GGGGCGTCTATGCCACCTTCGAGGCGCCCTCGGATTATGTGAAGCAGTGCTTCGCCCAATATGGCCTGAAGACCGACTCC ACCGGGCGCTACGCCACCATGTACAAGCCCTATCACCTGATCGGGCTTGAGCTGGGCATCTCCATCGCCTCCGCCGCGCT GCGGGGCGAGGCCACCGGCAGCACCCAGGGCTTCCGGGGCGATGTGGTCGCCACCGCCAAGCGCGACCTGAAGCCCGGCG AGAAGCTCGATGGCGAGGGCGGCTTCATGGTCTACGGCAAGCTCATGCCTGCCAGCCTCTCGCTGGCCCATGGCGGCCTG CCCATCGGCCTTGCCCATAACGTGGTGCTGAAGAACCCGGTCGCCGGCGGCCAGCCGGTGCGCTGGGCGGATGTCACCTT CGACGAGACCCAGCAGGCGGTGAAGGTGCGCCGCGAGATGGAAAGCCTGTTCCGCGCCGCCGACAGCGCCGGCCAAAAGG CCCCCGCTGCCGCGTGA
Upstream 100 bases:
>100_bases GTGGCGATTCAACCATTTATATTGGGAAAACCCCGCCTTACACCTGTGCGACGGATCGCGCGGCCCAAAGACCGCGATGC CAACGACACGGGAGAAAGCC
Downstream 100 bases:
>100_bases GGCTGCCGGCAGATCGCGGTGCGGCCTGCCAACGCCTCGTCACGCCTGGATATCAATAGGGTGGCGCTCAGAGCCCGTTT GAAAGCTCGGCCGGTTGGGC
Product: SAF domain-containing protein
Products: NA
Alternate protein names: SAF Domain Protein; Homoserine Dehydrogenase; NAD(P)-Dependent Oxidoreductase; Dihydrodipicolinate Reductase; Oxidoreductase; Oxidoreductase Domain Protein; Oxidoreductase Domain-Containing Protein; Oxidoreductase-Like; StrU Protein; Saf Domain Protein; SAF Domain Family Protein
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MNLYAKLKARAAAGRPVRVGVIGAGKFGSMFLSQGPRTPGLHIVGIADLDVNRARASCARVDWPAERYAARSFAEAMASG STFITDDAEALIATGGMDVIVEATGNPGAGIRHALLCCKHGRHIVMVNVEADALAGPLLARHAAAAGIVYSFAYGDQPAL IAEIVDWARTAGLEVICAGKGTKYLPAYHQSTPETVWGHYGFSPEEVAGGDFNAQMFNSFLDGTKSALEMAAVANGCDLE PAADGLSFPPCGKDDLPTILRPRADGGILPHKGTVEVVSSLERDGRPVFRDLRWGVYATFEAPSDYVKQCFAQYGLKTDS TGRYATMYKPYHLIGLELGISIASAALRGEATGSTQGFRGDVVATAKRDLKPGEKLDGEGGFMVYGKLMPASLSLAHGGL PIGLAHNVVLKNPVAGGQPVRWADVTFDETQQAVKVRREMESLFRAADSAGQKAPAAA
Sequences:
>Translated_458_residues MNLYAKLKARAAAGRPVRVGVIGAGKFGSMFLSQGPRTPGLHIVGIADLDVNRARASCARVDWPAERYAARSFAEAMASG STFITDDAEALIATGGMDVIVEATGNPGAGIRHALLCCKHGRHIVMVNVEADALAGPLLARHAAAAGIVYSFAYGDQPAL IAEIVDWARTAGLEVICAGKGTKYLPAYHQSTPETVWGHYGFSPEEVAGGDFNAQMFNSFLDGTKSALEMAAVANGCDLE PAADGLSFPPCGKDDLPTILRPRADGGILPHKGTVEVVSSLERDGRPVFRDLRWGVYATFEAPSDYVKQCFAQYGLKTDS TGRYATMYKPYHLIGLELGISIASAALRGEATGSTQGFRGDVVATAKRDLKPGEKLDGEGGFMVYGKLMPASLSLAHGGL PIGLAHNVVLKNPVAGGQPVRWADVTFDETQQAVKVRREMESLFRAADSAGQKAPAAA >Mature_458_residues MNLYAKLKARAAAGRPVRVGVIGAGKFGSMFLSQGPRTPGLHIVGIADLDVNRARASCARVDWPAERYAARSFAEAMASG STFITDDAEALIATGGMDVIVEATGNPGAGIRHALLCCKHGRHIVMVNVEADALAGPLLARHAAAAGIVYSFAYGDQPAL IAEIVDWARTAGLEVICAGKGTKYLPAYHQSTPETVWGHYGFSPEEVAGGDFNAQMFNSFLDGTKSALEMAAVANGCDLE PAADGLSFPPCGKDDLPTILRPRADGGILPHKGTVEVVSSLERDGRPVFRDLRWGVYATFEAPSDYVKQCFAQYGLKTDS TGRYATMYKPYHLIGLELGISIASAALRGEATGSTQGFRGDVVATAKRDLKPGEKLDGEGGFMVYGKLMPASLSLAHGGL PIGLAHNVVLKNPVAGGQPVRWADVTFDETQQAVKVRREMESLFRAADSAGQKAPAAA
Specific function: Unknown
COG id: COG4091
COG function: function code E; Predicted homoserine dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48308; Mature: 48308
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLYAKLKARAAAGRPVRVGVIGAGKFGSMFLSQGPRTPGLHIVGIADLDVNRARASCAR CCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHC VDWPAERYAARSFAEAMASGSTFITDDAEALIATGGMDVIVEATGNPGAGIRHALLCCKH CCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHC GRHIVMVNVEADALAGPLLARHAAAAGIVYSFAYGDQPALIAEIVDWARTAGLEVICAGK CCEEEEEEECHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCEEEECCC GTKYLPAYHQSTPETVWGHYGFSPEEVAGGDFNAQMFNSFLDGTKSALEMAAVANGCDLE CCCCCCHHCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC PAADGLSFPPCGKDDLPTILRPRADGGILPHKGTVEVVSSLERDGRPVFRDLRWGVYATF CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEEEEE EAPSDYVKQCFAQYGLKTDSTGRYATMYKPYHLIGLELGISIASAALRGEATGSTQGFRG CCCHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCC DVVATAKRDLKPGEKLDGEGGFMVYGKLMPASLSLAHGGLPIGLAHNVVLKNPVAGGQPV CEEEEHHHCCCCCCCCCCCCCEEEEEEECCCEEEHHCCCCCEEHCCCEEEECCCCCCCCE RWADVTFDETQQAVKVRREMESLFRAADSAGQKAPAAA EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MNLYAKLKARAAAGRPVRVGVIGAGKFGSMFLSQGPRTPGLHIVGIADLDVNRARASCAR CCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHC VDWPAERYAARSFAEAMASGSTFITDDAEALIATGGMDVIVEATGNPGAGIRHALLCCKH CCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHC GRHIVMVNVEADALAGPLLARHAAAAGIVYSFAYGDQPALIAEIVDWARTAGLEVICAGK CCEEEEEEECHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCEEEECCC GTKYLPAYHQSTPETVWGHYGFSPEEVAGGDFNAQMFNSFLDGTKSALEMAAVANGCDLE CCCCCCHHCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC PAADGLSFPPCGKDDLPTILRPRADGGILPHKGTVEVVSSLERDGRPVFRDLRWGVYATF CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEEEEE EAPSDYVKQCFAQYGLKTDSTGRYATMYKPYHLIGLELGISIASAALRGEATGSTQGFRG CCCHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCC DVVATAKRDLKPGEKLDGEGGFMVYGKLMPASLSLAHGGLPIGLAHNVVLKNPVAGGQPV CEEEEHHHCCCCCCCCCCCCCEEEEEEECCCEEEHHCCCCCEEHCCCEEEECCCCCCCCE RWADVTFDETQQAVKVRREMESLFRAADSAGQKAPAAA EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA