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The map label for this gene is xerC [C]

Identifier: 154244484

GI number: 154244484

Start: 594636

End: 596030

Strand: Direct

Name: xerC [C]

Synonym: Xaut_0528

Alternate gene names: 154244484

Gene position: 594636-596030 (Clockwise)

Preceding gene: 154244483

Following gene: 154244485

Centisome position: 11.2

GC content: 62.01

Gene sequence:

>1395_bases
GTGGACATTGTAATCGCAGCTCTAAGCATTACGATTCAGGAGCGCAGATCAGCGGATGGCGTTGATGCCCATGTCCCGAT
GATCCTCCAGGACGGGGCGCTATACGATCCTGCTCTGGATCGCTTTTTTCGCGATCTTCCTCTCAACGGCGTTCGCTCAC
GCCATTCCCTTCGTGCCTATGGCTACGATGTTTTGGTCTGGGCTCGTTTTCTTTCGGAAGCCTGCGCCAAGACGATATGG
CAAGCCGACCGGCATGACGTCCTTGCCTATCATCGCGTCCGCCGCCGCGCCGACGCGGGACAACGCATTTCCGCTGCGTC
CTGGAATCGCGCCGTTGCCTGTCTCGATCGGCTATATCGCTGGGGTGTGCAGGAAGGACTGATTGCAGAAGCACCCTTCA
CGCATCGCTCGGTCTGGAGGCAGGGGTACGCTGGGCGCCGGTCGCAGGTGGCAGCGCGGAACGATGCCTATGAACCTGCC
GCGCGTCGAGCGGACGTCAGTTTCGTCACGCTCGAGGACTATCGGCGCTTTCGGGATGTCGGCCTCAAGGCGCTTTTGCC
TGACGGCCGCACACGCCCCGGCGCCCGCGATCGCAACGGTATCCGCAATGCGTTGTTCGCCGATCTCCTCGTGACCACAG
GGCTTCGGCTGGAAGAAGCATCATCCCTCTTCACCTCCGATCTCGTTTTCGCCGATCAGCGTCCGGGCCGTCAGGTCTGG
CTGGACCTGCCGGATGCCCAGACCAAGGGCGATCGCGGTCGCCAGATCCTCGTTCCCGCTCGACTGCTCGAACAGGTGCG
CGCCTATGTCGATGTCGAGCGTGCTCATGCCATCACGAAGTTTCAGCAGCGGTCAGGATGGCAGTCGATCGACCGTCCGA
TCTTCGTTCATCGCGAGCGGCACGCGGCCCGGCTGCGACTGCTGGACGGTGGGGATATCGCTCTCGATCTGCTCGACCCC
GAGGAACGTTGCCGGATTATTGTCTGCGACAGCGACGGCACGCCGAGCGAACCGGCGGCATTGTGGCTTTCGGAGGTCGG
CATGCCGGTGCAGCCGAACTCGTGGGAAGTCATTTTCGCCCGCGCCTCCAGCCGGTGCCGGTCCTTCGGGTTAGATATCA
ACATCAGCCCGCACCAGCTCCGCCACACCTTTGCCGTTCACATGCTGGCGATGCTCATTCAGCACCGTATCCGTGACGCT
GCGCTTCCTGCCGGCTCGATGGAAGGATACCGGCAGATGCTCGGTGATCCTCTCCAGCAGGTGCAACGGCTTCTCGGCCA
TGCCAGCCTGACAACGACCTATATTTACCTCGACCACATAGCGACGCGCGCCGATACCGTCGATGCGGCTGTCGAGGAAC
TCCTTGGGCTGCTCCCTTCTGAGGCCACGCTATGA

Upstream 100 bases:

>100_bases
ATAGCTGGCGGAGGCCGGCCTGGATAGCGCCGGGCAAGTTGAACTCCTTCGTTGATGCTGGGCTCCCCGGAAGGGGGTCG
GGGGGAAGGTTGAACAACTT

Downstream 100 bases:

>100_bases
GGAGGCGTCCGCGCAAGGGAACCTCGGTGCGCTTTGCGCCCGCCGATGGCGCAGTTCCCCCGCACGCCGGTGATCCGGTG
CTCGGTCTGCGCTTCAACAT

Product: integrase domain-containing protein

Products: NA

Alternate protein names: Integrase; Phage Integrase Domain/SAM Domain-Containing Protein; Integrase Domain Protein SAM Domain Protein; Phage Integrase-Like SAM-Like; Site-Specific Recombinase XerD; Phage Integrase Family Domain-Containing Protein; Phage Integrase Family Protein; Phage Integrase Family Domain Protein; Phage Integrase-Like SAM-Like Protein; Phage Type Integrase/Recombinase; Orf_Bo

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MDIVIAALSITIQERRSADGVDAHVPMILQDGALYDPALDRFFRDLPLNGVRSRHSLRAYGYDVLVWARFLSEACAKTIW
QADRHDVLAYHRVRRRADAGQRISAASWNRAVACLDRLYRWGVQEGLIAEAPFTHRSVWRQGYAGRRSQVAARNDAYEPA
ARRADVSFVTLEDYRRFRDVGLKALLPDGRTRPGARDRNGIRNALFADLLVTTGLRLEEASSLFTSDLVFADQRPGRQVW
LDLPDAQTKGDRGRQILVPARLLEQVRAYVDVERAHAITKFQQRSGWQSIDRPIFVHRERHAARLRLLDGGDIALDLLDP
EERCRIIVCDSDGTPSEPAALWLSEVGMPVQPNSWEVIFARASSRCRSFGLDINISPHQLRHTFAVHMLAMLIQHRIRDA
ALPAGSMEGYRQMLGDPLQQVQRLLGHASLTTTYIYLDHIATRADTVDAAVEELLGLLPSEATL

Sequences:

>Translated_464_residues
MDIVIAALSITIQERRSADGVDAHVPMILQDGALYDPALDRFFRDLPLNGVRSRHSLRAYGYDVLVWARFLSEACAKTIW
QADRHDVLAYHRVRRRADAGQRISAASWNRAVACLDRLYRWGVQEGLIAEAPFTHRSVWRQGYAGRRSQVAARNDAYEPA
ARRADVSFVTLEDYRRFRDVGLKALLPDGRTRPGARDRNGIRNALFADLLVTTGLRLEEASSLFTSDLVFADQRPGRQVW
LDLPDAQTKGDRGRQILVPARLLEQVRAYVDVERAHAITKFQQRSGWQSIDRPIFVHRERHAARLRLLDGGDIALDLLDP
EERCRIIVCDSDGTPSEPAALWLSEVGMPVQPNSWEVIFARASSRCRSFGLDINISPHQLRHTFAVHMLAMLIQHRIRDA
ALPAGSMEGYRQMLGDPLQQVQRLLGHASLTTTYIYLDHIATRADTVDAAVEELLGLLPSEATL
>Mature_464_residues
MDIVIAALSITIQERRSADGVDAHVPMILQDGALYDPALDRFFRDLPLNGVRSRHSLRAYGYDVLVWARFLSEACAKTIW
QADRHDVLAYHRVRRRADAGQRISAASWNRAVACLDRLYRWGVQEGLIAEAPFTHRSVWRQGYAGRRSQVAARNDAYEPA
ARRADVSFVTLEDYRRFRDVGLKALLPDGRTRPGARDRNGIRNALFADLLVTTGLRLEEASSLFTSDLVFADQRPGRQVW
LDLPDAQTKGDRGRQILVPARLLEQVRAYVDVERAHAITKFQQRSGWQSIDRPIFVHRERHAARLRLLDGGDIALDLLDP
EERCRIIVCDSDGTPSEPAALWLSEVGMPVQPNSWEVIFARASSRCRSFGLDINISPHQLRHTFAVHMLAMLIQHRIRDA
ALPAGSMEGYRQMLGDPLQQVQRLLGHASLTTTYIYLDHIATRADTVDAAVEELLGLLPSEATL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52333; Mature: 52333

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVIAALSITIQERRSADGVDAHVPMILQDGALYDPALDRFFRDLPLNGVRSRHSLRAY
CCEEEEEHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
GYDVLVWARFLSEACAKTIWQADRHDVLAYHRVRRRADAGQRISAASWNRAVACLDRLYR
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
WGVQEGLIAEAPFTHRSVWRQGYAGRRSQVAARNDAYEPAARRADVSFVTLEDYRRFRDV
CCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHCCCEEEEHHHHHHHHHC
GLKALLPDGRTRPGARDRNGIRNALFADLLVTTGLRLEEASSLFTSDLVFADQRPGRQVW
CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCEEE
LDLPDAQTKGDRGRQILVPARLLEQVRAYVDVERAHAITKFQQRSGWQSIDRPIFVHRER
EECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCC
HAARLRLLDGGDIALDLLDPEERCRIIVCDSDGTPSEPAALWLSEVGMPVQPNSWEVIFA
CCEEEEEEECCCEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEEE
RASSRCRSFGLDINISPHQLRHTFAVHMLAMLIQHRIRDAALPAGSMEGYRQMLGDPLQQ
CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHH
VQRLLGHASLTTTYIYLDHIATRADTVDAAVEELLGLLPSEATL
HHHHHCCHHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDIVIAALSITIQERRSADGVDAHVPMILQDGALYDPALDRFFRDLPLNGVRSRHSLRAY
CCEEEEEHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
GYDVLVWARFLSEACAKTIWQADRHDVLAYHRVRRRADAGQRISAASWNRAVACLDRLYR
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
WGVQEGLIAEAPFTHRSVWRQGYAGRRSQVAARNDAYEPAARRADVSFVTLEDYRRFRDV
CCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHCCCEEEEHHHHHHHHHC
GLKALLPDGRTRPGARDRNGIRNALFADLLVTTGLRLEEASSLFTSDLVFADQRPGRQVW
CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCEEE
LDLPDAQTKGDRGRQILVPARLLEQVRAYVDVERAHAITKFQQRSGWQSIDRPIFVHRER
EECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCC
HAARLRLLDGGDIALDLLDPEERCRIIVCDSDGTPSEPAALWLSEVGMPVQPNSWEVIFA
CCEEEEEEECCCEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEEE
RASSRCRSFGLDINISPHQLRHTFAVHMLAMLIQHRIRDAALPAGSMEGYRQMLGDPLQQ
CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHH
VQRLLGHASLTTTYIYLDHIATRADTVDAAVEELLGLLPSEATL
HHHHHCCHHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA