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The map label for this gene is ydfH [H]

Identifier: 154244442

GI number: 154244442

Start: 537657

End: 538385

Strand: Direct

Name: ydfH [H]

Synonym: Xaut_0485

Alternate gene names: 154244442

Gene position: 537657-538385 (Clockwise)

Preceding gene: 154244441

Following gene: 154244443

Centisome position: 10.13

GC content: 65.43

Gene sequence:

>729_bases
GTGCATCAACTGCCAGTGCATCAGACCCCCGCGCCGGTCACGGACGCTCCGAAGCTCAACGTCGAGCCGCTGGAGGCTGC
CTCGAGCCTGCGCATGCTTGCTTACGATGCGCTCAAGCGAGCCATCACCCAAATGGACATCTACGGCAGCGCCGCCGAGT
TCCGCCTCGACGAGCGCCAGCTCTCCGAGACGCTCGGGGTGTCGCGGACGCCGATCCGCGAGGCGATGACGGTGCTGGAG
CAGGAAGGTTTCGTGCGTTCGGTGCCGCGCCGGGGCATCTTCGTGGTGCGCAAGACCAAGCGCGAGATCCTCGACCTCAT
CGTGGTCTGGGCGGCGCTGGAAGGCATGGCGGCGCGGCTTGCCGCGACCAATGCCTCCGACGACGAGATCGACAGCCTGC
GCCGGCTGTTCAACGAATTCGAGGCCACGCCTCCGGCGAGCCCCATGCATGAATATTCGCAGGCGAACATCGCCTTCCAC
CAGGCGGTCATCCGCATGGGAGGCTGCCGCCTGATCGTGGACATGACCGGGAACCTGTTCCTGCACATGCGCGCCATCCG
CGCGGTGTCGGTGCGGCAGGAGAACCGGTTTGAAATCTCCATGCGGGAACACATGGCGATCATCGACGCGCTCGAGCAAA
GGGACCCAGATCTCGCCGAGCGCCTGGTGCGGGAACACACCATGGGTCTTGCGGCCCATGTGGAGCGGCACGGTGTCTTT
CCCGAATAG

Upstream 100 bases:

>100_bases
ATCGGGATTGCGTTGGCGTTATGAAGACCGTATACAGTATTTCACGGAGTTGGACCGCCTCGCCAGAAGGTGGCCGTTCC
AGGGAGAGGAAGCCAAGGTC

Downstream 100 bases:

>100_bases
GCCGAGAACAAGCCAAACCGGGACGACGCGCTGAAGGAGACGCCTCATGGCAACGGCGGAAAAGACCAAGATCGAAGACA
ACGTGGTGCATCTCGACCCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MHQLPVHQTPAPVTDAPKLNVEPLEAASSLRMLAYDALKRAITQMDIYGSAAEFRLDERQLSETLGVSRTPIREAMTVLE
QEGFVRSVPRRGIFVVRKTKREILDLIVVWAALEGMAARLAATNASDDEIDSLRRLFNEFEATPPASPMHEYSQANIAFH
QAVIRMGGCRLIVDMTGNLFLHMRAIRAVSVRQENRFEISMREHMAIIDALEQRDPDLAERLVREHTMGLAAHVERHGVF
PE

Sequences:

>Translated_242_residues
MHQLPVHQTPAPVTDAPKLNVEPLEAASSLRMLAYDALKRAITQMDIYGSAAEFRLDERQLSETLGVSRTPIREAMTVLE
QEGFVRSVPRRGIFVVRKTKREILDLIVVWAALEGMAARLAATNASDDEIDSLRRLFNEFEATPPASPMHEYSQANIAFH
QAVIRMGGCRLIVDMTGNLFLHMRAIRAVSVRQENRFEISMREHMAIIDALEQRDPDLAERLVREHTMGLAAHVERHGVF
PE
>Mature_242_residues
MHQLPVHQTPAPVTDAPKLNVEPLEAASSLRMLAYDALKRAITQMDIYGSAAEFRLDERQLSETLGVSRTPIREAMTVLE
QEGFVRSVPRRGIFVVRKTKREILDLIVVWAALEGMAARLAATNASDDEIDSLRRLFNEFEATPPASPMHEYSQANIAFH
QAVIRMGGCRLIVDMTGNLFLHMRAIRAVSVRQENRFEISMREHMAIIDALEQRDPDLAERLVREHTMGLAAHVERHGVF
PE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=179, Percent_Identity=25.6983240223464, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789353, Length=192, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27333; Mature: 27333

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQLPVHQTPAPVTDAPKLNVEPLEAASSLRMLAYDALKRAITQMDIYGSAAEFRLDERQ
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LSETLGVSRTPIREAMTVLEQEGFVRSVPRRGIFVVRKTKREILDLIVVWAALEGMAARL
HHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
AATNASDDEIDSLRRLFNEFEATPPASPMHEYSQANIAFHQAVIRMGGCRLIVDMTGNLF
HHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
LHMRAIRAVSVRQENRFEISMREHMAIIDALEQRDPDLAERLVREHTMGLAAHVERHGVF
HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
PE
CC
>Mature Secondary Structure
MHQLPVHQTPAPVTDAPKLNVEPLEAASSLRMLAYDALKRAITQMDIYGSAAEFRLDERQ
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LSETLGVSRTPIREAMTVLEQEGFVRSVPRRGIFVVRKTKREILDLIVVWAALEGMAARL
HHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
AATNASDDEIDSLRRLFNEFEATPPASPMHEYSQANIAFHQAVIRMGGCRLIVDMTGNLF
HHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
LHMRAIRAVSVRQENRFEISMREHMAIIDALEQRDPDLAERLVREHTMGLAAHVERHGVF
HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
PE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]