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The map label for this gene is yggS [C]

Identifier: 154244235

GI number: 154244235

Start: 280130

End: 280828

Strand: Reverse

Name: yggS [C]

Synonym: Xaut_0278

Alternate gene names: 154244235

Gene position: 280828-280130 (Counterclockwise)

Preceding gene: 154244237

Following gene: 154244228

Centisome position: 5.29

GC content: 69.24

Gene sequence:

>699_bases
ATGAACACACAAGCCGAGGCGCAGGACGCGGCGTCAGGTCTTCACGCCGTGCGCGCGGAGGTCCTGTCCTCCTGCCGCGA
CGCCGGGCGCGATCCGGCCACCGTGACGCTGGTGGCCGTCTCCAAGACCTTCCCGGCCCCCGAGATCGTGCCGGTCCTGG
CCGCCGGCCAGAGGGTGTTCGGCGAGAACCGGGTGCAGGAGGCGCAGGGCAAGTGGCCCGCCTTGCGCGCGGACTATCAA
GGCGTCGAGCTGCATCTCATCGGGCCGCTGCAATCCAACAAGGCGCGCGAGGCCGTGGAGTTGTTCGACGTGATCCACAC
CGTGGACCGGCCGAAGATCGCCGCCGCACTGGCCGGGGAGATGGCCCGCCAGGGCCGGAACCCGCGCCTGTTCGTGCAGG
TGAACACCGGAGCCGAGCCGCAGAAGGCCGGCGTCCTGCCGGAAACCGCGGACGCCTTCATCGCCGAATGCCGGGAGCGC
CACGGGCTAAAGATCTTCGGCCTGATGTGCATTCCACCCGCGACGGACGTGCCCGATCCGCATTTCGCGCTGCTGGCCAA
GATCGCAGCGCGCAACGGCATTTCGGGCCTTTCCATGGGCATGAGCGCCGACTTTCCGGCCGCCATCCGCCAGGGCGCGA
CCCACGTGCGCGTGGGCAGCGCCATCTTTGGCCACAGATCCTTGCCCAACGAGGCTTGA

Upstream 100 bases:

>100_bases
GCGGCGCCCCGTCGCCTGTGGCGATCGCATGGACTTCACCTGCAGCGGCATCCGCGCTCCAGGCGTTACAGGACTGCACC
CGGGGAGAGGTCAGGGCATC

Downstream 100 bases:

>100_bases
AGTCCCCGCCGAACGCCGCTATAGAGCACCCCTCTCGCGAGATGCTCCCATCGTCTAGCGGTCTAGGACGTCGCCCTCTC
ACGGCGAAAACAGGGGTTCG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MNTQAEAQDAASGLHAVRAEVLSSCRDAGRDPATVTLVAVSKTFPAPEIVPVLAAGQRVFGENRVQEAQGKWPALRADYQ
GVELHLIGPLQSNKAREAVELFDVIHTVDRPKIAAALAGEMARQGRNPRLFVQVNTGAEPQKAGVLPETADAFIAECRER
HGLKIFGLMCIPPATDVPDPHFALLAKIAARNGISGLSMGMSADFPAAIRQGATHVRVGSAIFGHRSLPNEA

Sequences:

>Translated_232_residues
MNTQAEAQDAASGLHAVRAEVLSSCRDAGRDPATVTLVAVSKTFPAPEIVPVLAAGQRVFGENRVQEAQGKWPALRADYQ
GVELHLIGPLQSNKAREAVELFDVIHTVDRPKIAAALAGEMARQGRNPRLFVQVNTGAEPQKAGVLPETADAFIAECRER
HGLKIFGLMCIPPATDVPDPHFALLAKIAARNGISGLSMGMSADFPAAIRQGATHVRVGSAIFGHRSLPNEA
>Mature_232_residues
MNTQAEAQDAASGLHAVRAEVLSSCRDAGRDPATVTLVAVSKTFPAPEIVPVLAAGQRVFGENRVQEAQGKWPALRADYQ
GVELHLIGPLQSNKAREAVELFDVIHTVDRPKIAAALAGEMARQGRNPRLFVQVNTGAEPQKAGVLPETADAFIAECRER
HGLKIFGLMCIPPATDVPDPHFALLAKIAARNGISGLSMGMSADFPAAIRQGATHVRVGSAIFGHRSLPNEA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=210, Percent_Identity=37.1428571428571, Blast_Score=102, Evalue=3e-22,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=37.9310344827586, Blast_Score=133, Evalue=8e-33,
Organism=Caenorhabditis elegans, GI17533025, Length=216, Percent_Identity=37.962962962963, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=222, Percent_Identity=37.3873873873874, Blast_Score=104, Evalue=9e-24,
Organism=Drosophila melanogaster, GI45550861, Length=214, Percent_Identity=35.5140186915888, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24621; Mature: 24621

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQAEAQDAASGLHAVRAEVLSSCRDAGRDPATVTLVAVSKTFPAPEIVPVLAAGQRVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHCHHHH
GENRVQEAQGKWPALRADYQGVELHLIGPLQSNKAREAVELFDVIHTVDRPKIAAALAGE
CHHHHHHHCCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
MARQGRNPRLFVQVNTGAEPQKAGVLPETADAFIAECRERHGLKIFGLMCIPPATDVPDP
HHHCCCCCEEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCH
HFALLAKIAARNGISGLSMGMSADFPAAIRQGATHVRVGSAIFGHRSLPNEA
HHHHHHHHHHHCCCCHHHCCCCCCCHHHHHCCCCEEEECHHHHCCCCCCCCC
>Mature Secondary Structure
MNTQAEAQDAASGLHAVRAEVLSSCRDAGRDPATVTLVAVSKTFPAPEIVPVLAAGQRVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHCHHHH
GENRVQEAQGKWPALRADYQGVELHLIGPLQSNKAREAVELFDVIHTVDRPKIAAALAGE
CHHHHHHHCCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
MARQGRNPRLFVQVNTGAEPQKAGVLPETADAFIAECRERHGLKIFGLMCIPPATDVPDP
HHHCCCCCEEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCH
HFALLAKIAARNGISGLSMGMSADFPAAIRQGATHVRVGSAIFGHRSLPNEA
HHHHHHHHHHHCCCCHHHCCCCCCCHHHHHCCCCEEEECHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]