Click here to switch to the map view.

The map label for this gene is bkdR [H]

Identifier: 154244171

GI number: 154244171

Start: 215965

End: 216426

Strand: Reverse

Name: bkdR [H]

Synonym: Xaut_0213

Alternate gene names: 154244171

Gene position: 216426-215965 (Counterclockwise)

Preceding gene: 154244174

Following gene: 154244170

Centisome position: 4.08

GC content: 66.67

Gene sequence:

>462_bases
TTGCGCCTCGACGCCATCGACCGGAAGATCCTCGCCGCCCTGCAGCGCGACGGGCGCATGAGCATCGCCGATCTCGCGGA
CGAGGTGGGCCTTTCCCCCTCGCCCTGCCTGCGGCGGGTGCGGGCGCTGGAGGAGGACGGCCTCATCTCCCGCTATGTGG
CGGTGCTGGACCAGCGCAAGGCCGGCCTGCCGGTGAGCGTGTTCGTCTCCATCAAGCTGGAACGGCAGAAGGAGGAGGCG
CTGGACGCCTTCGCCGCCGCCATCCGCACCTGGCCGGAGGTGCTGGAATGCTATCTCATGACCGGCCAGCGGGACTACCT
TTTACGGGTGGTGGCGGCGGACCTCGATGCCTATGAGAGGTTCCTGAAGCAGAAGCTGACCCGGCTGGAGGGGATCGCCT
CCATCGAAAGCTCGTTTTCGCTGGAGCAGGTGAAATATTCCCACGTCCTGCCCCTGCCCTGA

Upstream 100 bases:

>100_bases
AGTCTAGCGCGAGCCGCCCGGCAGGTTCGCTCAAATCCACATTAACACGGGACCAATTGAGGCATATCCTGCCAATATCT
GTCGCTTTTGGAGCGAAAAA

Downstream 100 bases:

>100_bases
GGGCGCGCGGACGGCATCAACTCGGTCGGCAACACGGCAAGGAGGAACCCCATGAGCGTGCGCGTCGGCATCGGCGGATG
GACGTTCGAGCCCTGGCGGG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MRLDAIDRKILAALQRDGRMSIADLADEVGLSPSPCLRRVRALEEDGLISRYVAVLDQRKAGLPVSVFVSIKLERQKEEA
LDAFAAAIRTWPEVLECYLMTGQRDYLLRVVAADLDAYERFLKQKLTRLEGIASIESSFSLEQVKYSHVLPLP

Sequences:

>Translated_153_residues
MRLDAIDRKILAALQRDGRMSIADLADEVGLSPSPCLRRVRALEEDGLISRYVAVLDQRKAGLPVSVFVSIKLERQKEEA
LDAFAAAIRTWPEVLECYLMTGQRDYLLRVVAADLDAYERFLKQKLTRLEGIASIESSFSLEQVKYSHVLPLP
>Mature_153_residues
MRLDAIDRKILAALQRDGRMSIADLADEVGLSPSPCLRRVRALEEDGLISRYVAVLDQRKAGLPVSVFVSIKLERQKEEA
LDAFAAAIRTWPEVLECYLMTGQRDYLLRVVAADLDAYERFLKQKLTRLEGIASIESSFSLEQVKYSHVLPLP

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=41.3333333333333, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=41.8918918918919, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1790182, Length=141, Percent_Identity=28.3687943262411, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17262; Mature: 17262

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDAIDRKILAALQRDGRMSIADLADEVGLSPSPCLRRVRALEEDGLISRYVAVLDQRK
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
AGLPVSVFVSIKLERQKEEALDAFAAAIRTWPEVLECYLMTGQRDYLLRVVAADLDAYER
CCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FLKQKLTRLEGIASIESSFSLEQVKYSHVLPLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLDAIDRKILAALQRDGRMSIADLADEVGLSPSPCLRRVRALEEDGLISRYVAVLDQRK
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
AGLPVSVFVSIKLERQKEEALDAFAAAIRTWPEVLECYLMTGQRDYLLRVVAADLDAYER
CCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FLKQKLTRLEGIASIESSFSLEQVKYSHVLPLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]