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The map label for this gene is ydeB [H]

Identifier: 154244145

GI number: 154244145

Start: 188654

End: 189274

Strand: Direct

Name: ydeB [H]

Synonym: Xaut_0187

Alternate gene names: 154244145

Gene position: 188654-189274 (Clockwise)

Preceding gene: 154244139

Following gene: 154244146

Centisome position: 3.55

GC content: 61.51

Gene sequence:

>621_bases
ATGTCCTTGGGCCGGATCAGGAGTGTCAAGAGCATGTCGGCAAAGAAGAACGCGCAGACCCGTCTCGGCTTCAAGACGGG
TGAGCACATTGTTTACCCGTCCCACGGCGTGGGCCGCATCATGGCCATCGAGGAACAGGAAGTCGCCGGTTTCAAGCTCG
AACTCTTCGTGATCTCGTTTGAAAAGGACAAGATGACGCTGCGGGTGCCCGTGCCCAAGATCGCCACGGTCGGCATGCGC
AAGCTCTCCGAAACCAATATCGTCGACAAGTCGCTGGAAACTCTTCAGGGTCGCGCCCGCGTGAAGCGCACCATGTGGAG
CCGCCGCGCCCAGGAATACGAAGCCAAGATCAATTCGGGCGACCTCGTTGCCATCTCCGAAGTGGTGCGTGACCTGTATC
GCTCCGACGCCCAGCCCGAGCAGTCCTATTCCGAGCGCCAGCTTTATGAAGCCGCTCTGGACCGTATGGCCCGCGAGCTT
TCGGCGGTGAACAACATCACCGAGACCGAGGCGGTGAAGCTCATCGAGCAGAACCTGCTCAAGGGTCCGCGCCGCGGCAC
GGCGAAGGTGGTGGAAGAGGCCGACCTCGACGCCGAGATCGAGACCGACGAGGCGGCGTGA

Upstream 100 bases:

>100_bases
GGGCGTTCCGGCCGCGACCCAAGTCCGCAGCGCCAGGGTGCGCGCCGTCCCGGTACCGGACCGGCCGGCCTCCGCGCCAA
CAGGTTCGGCCCCAGGCTTC

Downstream 100 bases:

>100_bases
TCTTCGTCGCCTGATCCCGTTTCCAAGGTCCTGTTTCCAAGTCAAAGACCCGGCTCCGGCCGGGTCTTTCTTTTTGGGCG
GTCTTCCCGGGGGGCGCTCA

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSLGRIRSVKSMSAKKNAQTRLGFKTGEHIVYPSHGVGRIMAIEEQEVAGFKLELFVISFEKDKMTLRVPVPKIATVGMR
KLSETNIVDKSLETLQGRARVKRTMWSRRAQEYEAKINSGDLVAISEVVRDLYRSDAQPEQSYSERQLYEAALDRMAREL
SAVNNITETEAVKLIEQNLLKGPRRGTAKVVEEADLDAEIETDEAA

Sequences:

>Translated_206_residues
MSLGRIRSVKSMSAKKNAQTRLGFKTGEHIVYPSHGVGRIMAIEEQEVAGFKLELFVISFEKDKMTLRVPVPKIATVGMR
KLSETNIVDKSLETLQGRARVKRTMWSRRAQEYEAKINSGDLVAISEVVRDLYRSDAQPEQSYSERQLYEAALDRMAREL
SAVNNITETEAVKLIEQNLLKGPRRGTAKVVEEADLDAEIETDEAA
>Mature_205_residues
SLGRIRSVKSMSAKKNAQTRLGFKTGEHIVYPSHGVGRIMAIEEQEVAGFKLELFVISFEKDKMTLRVPVPKIATVGMRK
LSETNIVDKSLETLQGRARVKRTMWSRRAQEYEAKINSGDLVAISEVVRDLYRSDAQPEQSYSERQLYEAALDRMARELS
AVNNITETEAVKLIEQNLLKGPRRGTAKVVEEADLDAEIETDEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 23171; Mature: 23040

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLGRIRSVKSMSAKKNAQTRLGFKTGEHIVYPSHGVGRIMAIEEQEVAGFKLELFVISF
CCCCHHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEEEEE
EKDKMTLRVPVPKIATVGMRKLSETNIVDKSLETLQGRARVKRTMWSRRAQEYEAKINSG
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DLVAISEVVRDLYRSDAQPEQSYSERQLYEAALDRMARELSAVNNITETEAVKLIEQNLL
CEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KGPRRGTAKVVEEADLDAEIETDEAA
CCCCCCHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SLGRIRSVKSMSAKKNAQTRLGFKTGEHIVYPSHGVGRIMAIEEQEVAGFKLELFVISF
CCCHHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEEEEE
EKDKMTLRVPVPKIATVGMRKLSETNIVDKSLETLQGRARVKRTMWSRRAQEYEAKINSG
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DLVAISEVVRDLYRSDAQPEQSYSERQLYEAALDRMARELSAVNNITETEAVKLIEQNLL
CEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KGPRRGTAKVVEEADLDAEIETDEAA
CCCCCCHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]