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The map label for this gene is rsmB [H]

Identifier: 154243996

GI number: 154243996

Start: 40184

End: 41599

Strand: Direct

Name: rsmB [H]

Synonym: Xaut_0038

Alternate gene names: 154243996

Gene position: 40184-41599 (Clockwise)

Preceding gene: 154243993

Following gene: 154243997

Centisome position: 0.76

GC content: 70.9

Gene sequence:

>1416_bases
ATGGTTCGTGCTCTACCTTGCGCGATGAAACCGCCTTCTCGCGCCCACAAGCCCGCCCGCCGCCCCGGTTCAGGATCCGC
CCCGGCTCCTGGCAGACCTACTGCTGGCAAACCTGCCGCCGCGACGCCCGGCCTTGCCGCCCGCATCCTCGCCGTGGACG
GCCTTGAGCAGGTGCTGCGCCACGGTGCCGCGCTTGAGGATGCCCTCGATGCCGATGTCGCCCTCGACCCGCGCGACCGG
GCACTCGCCTACCGCATCCTCGCCACCAGCCTGCGCCGCATCGGGACCCTGCGCGCCCTGATCGCCAAGCTGATGGAGCG
CGGCCTGCCGAAATCCGCGCCGCGGCTGGAATCCGTGCTGCTGGCCGGGGCGACGCAGATCCTGTTCATGGACGTGCCCA
ACCACGCCGCCGTGGGCCTGTGCGTGGACGTGGCCCGCGCCGACCGCAACACCGCCGGGTTCGCCGGCCTCGTGAATGCC
GTGCTGCGCCGCCTCACCCGCGAGGCGGATGCGCTGATGGTGGGCATCAGCCCCGATTTCGCCGATACGCCGGAATGGAT
GGGCCAGCGCTGGATCAAGGCGTACGGCCTTGAGACCACCCGCGCCATCGCCGCCATGCACAAGGTGGAGCCGCCCCTCG
ACATCACCGTGAAGGCGGACCCTGCGCTGTGGGCGGAGCGCCTGTCGGGCGAGGTGTTGCCCACCGGCTCGGTGCGCATC
CTGCAGGCTGGGCCGGTGCGCGCCCTGCCGGGCTTCGCCGAGGGCGACTGGTGGGTGCAGGATGCCGCCGCCGCATTGCC
GGCCCGGCTGCTGGGCGACGTGAAGGGCCTGAAGGTTGCGGATCTGTGCGCCGCCCCGGGCGGCAAGACGGCGCAGCTTG
CGGCGGCGGGTGCCATCGTCACCGCCGTGGACCGTTCGTCGTCCCGCCTCACCCGGCTGAAGGAAAACCTGGAGCGCCTG
AAGCTTTCCGCCCAGGTGGTGGCGGGGGATGCGGCCGACTTTTCCGGCGGCCCGTTCGATGCCGTGCTGCTGGACGCACC
GTGCTCGGCCACCGGCACCCTGCGCCGGCATCCGGACATCGCCGTCAACAAGCGGCCGGGGGACCTCGTCACCCTTGCCG
GCCTTCAGGCCCGGCTGATCGCCCATGCGGCGGACCTGCTCAAGCCCGGCGGCACCCTGGTCTATTCCACCTGCTCGCTG
GAGCCGGAGGAGGGGGAACAGCAGGTTGAACGGCTGCTGGCCGCCCGCAGTGATATAATCCGCGCACCAATCGTGCCCGG
AGAGGTGGAAGGCATCGATCCGTTCATAACTCCTCAAGGGGATGTGCGCACTCTTCCCAGTCACTGGATGCGGGGGGAAG
CGGAGCGGTCGGGTCTCGACGGCTTCTTCGCCGCCCGGCTGAAGCGCCGGGCCTGA

Upstream 100 bases:

>100_bases
TACGAATGCGTCTTACGGGATCGGCGCTGGCGAGGCAAGGTAAACGAGGCGCAGCGCGCGTGCGGAAGGCGCCGCGTGGC
AAAGCCGTTGGCGCGGGCAC

Downstream 100 bases:

>100_bases
GGTCTCAGGCCTGGTTGGCCCGGTCGGCCCTCCCATCCGTTGCGAATCAGTCGGTGAAGACGAGCGCATGCGGATTTGGA
ATGGAGCGGCGGGGCCTCTT

Product: sun protein

Products: NA

Alternate protein names: 16S rRNA m5C967 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MVRALPCAMKPPSRAHKPARRPGSGSAPAPGRPTAGKPAAATPGLAARILAVDGLEQVLRHGAALEDALDADVALDPRDR
ALAYRILATSLRRIGTLRALIAKLMERGLPKSAPRLESVLLAGATQILFMDVPNHAAVGLCVDVARADRNTAGFAGLVNA
VLRRLTREADALMVGISPDFADTPEWMGQRWIKAYGLETTRAIAAMHKVEPPLDITVKADPALWAERLSGEVLPTGSVRI
LQAGPVRALPGFAEGDWWVQDAAAALPARLLGDVKGLKVADLCAAPGGKTAQLAAAGAIVTAVDRSSSRLTRLKENLERL
KLSAQVVAGDAADFSGGPFDAVLLDAPCSATGTLRRHPDIAVNKRPGDLVTLAGLQARLIAHAADLLKPGGTLVYSTCSL
EPEEGEQQVERLLAARSDIIRAPIVPGEVEGIDPFITPQGDVRTLPSHWMRGEAERSGLDGFFAARLKRRA

Sequences:

>Translated_471_residues
MVRALPCAMKPPSRAHKPARRPGSGSAPAPGRPTAGKPAAATPGLAARILAVDGLEQVLRHGAALEDALDADVALDPRDR
ALAYRILATSLRRIGTLRALIAKLMERGLPKSAPRLESVLLAGATQILFMDVPNHAAVGLCVDVARADRNTAGFAGLVNA
VLRRLTREADALMVGISPDFADTPEWMGQRWIKAYGLETTRAIAAMHKVEPPLDITVKADPALWAERLSGEVLPTGSVRI
LQAGPVRALPGFAEGDWWVQDAAAALPARLLGDVKGLKVADLCAAPGGKTAQLAAAGAIVTAVDRSSSRLTRLKENLERL
KLSAQVVAGDAADFSGGPFDAVLLDAPCSATGTLRRHPDIAVNKRPGDLVTLAGLQARLIAHAADLLKPGGTLVYSTCSL
EPEEGEQQVERLLAARSDIIRAPIVPGEVEGIDPFITPQGDVRTLPSHWMRGEAERSGLDGFFAARLKRRA
>Mature_471_residues
MVRALPCAMKPPSRAHKPARRPGSGSAPAPGRPTAGKPAAATPGLAARILAVDGLEQVLRHGAALEDALDADVALDPRDR
ALAYRILATSLRRIGTLRALIAKLMERGLPKSAPRLESVLLAGATQILFMDVPNHAAVGLCVDVARADRNTAGFAGLVNA
VLRRLTREADALMVGISPDFADTPEWMGQRWIKAYGLETTRAIAAMHKVEPPLDITVKADPALWAERLSGEVLPTGSVRI
LQAGPVRALPGFAEGDWWVQDAAAALPARLLGDVKGLKVADLCAAPGGKTAQLAAAGAIVTAVDRSSSRLTRLKENLERL
KLSAQVVAGDAADFSGGPFDAVLLDAPCSATGTLRRHPDIAVNKRPGDLVTLAGLQARLIAHAADLLKPGGTLVYSTCSL
EPEEGEQQVERLLAARSDIIRAPIVPGEVEGIDPFITPQGDVRTLPSHWMRGEAERSGLDGFFAARLKRRA

Specific function: Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA [H]

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=247, Percent_Identity=34.412955465587, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI76150623, Length=247, Percent_Identity=34.412955465587, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI32698918, Length=172, Percent_Identity=35.4651162790698, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI301336155, Length=215, Percent_Identity=32.5581395348837, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI39995082, Length=215, Percent_Identity=32.5581395348837, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI23199998, Length=237, Percent_Identity=34.5991561181435, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI270288818, Length=237, Percent_Identity=34.5991561181435, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI270288816, Length=237, Percent_Identity=34.5991561181435, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI8922322, Length=237, Percent_Identity=34.5991561181435, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI40316918, Length=185, Percent_Identity=36.2162162162162, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI11545785, Length=187, Percent_Identity=31.5508021390374, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI2367212, Length=390, Percent_Identity=35.3846153846154, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI87081985, Length=261, Percent_Identity=32.9501915708812, Blast_Score=108, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17536757, Length=239, Percent_Identity=35.1464435146443, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI115534021, Length=227, Percent_Identity=33.4801762114537, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71998419, Length=227, Percent_Identity=33.4801762114537, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI25143471, Length=172, Percent_Identity=38.3720930232558, Blast_Score=85, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6324268, Length=237, Percent_Identity=32.0675105485232, Blast_Score=106, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6319447, Length=184, Percent_Identity=33.1521739130435, Blast_Score=81, Evalue=3e-16,
Organism=Drosophila melanogaster, GI22024126, Length=238, Percent_Identity=31.5126050420168, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI21355201, Length=178, Percent_Identity=35.3932584269663, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24668781, Length=183, Percent_Identity=33.879781420765, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21356513, Length=173, Percent_Identity=34.6820809248555, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI19920494, Length=207, Percent_Identity=27.0531400966184, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21356579, Length=162, Percent_Identity=30.8641975308642, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: =2.1.1.176 [H]

Molecular weight: Translated: 49678; Mature: 49678

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRALPCAMKPPSRAHKPARRPGSGSAPAPGRPTAGKPAAATPGLAARILAVDGLEQVLR
CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
HGAALEDALDADVALDPRDRALAYRILATSLRRIGTLRALIAKLMERGLPKSAPRLESVL
CCCHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LAGATQILFMDVPNHAAVGLCVDVARADRNTAGFAGLVNAVLRRLTREADALMVGISPDF
HHCCEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
ADTPEWMGQRWIKAYGLETTRAIAAMHKVEPPLDITVKADPALWAERLSGEVLPTGSVRI
CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCCEEE
LQAGPVRALPGFAEGDWWVQDAAAALPARLLGDVKGLKVADLCAAPGGKTAQLAAAGAIV
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCHHHHHCCCEE
TAVDRSSSRLTRLKENLERLKLSAQVVAGDAADFSGGPFDAVLLDAPCSATGTLRRHPDI
EEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCE
AVNKRPGDLVTLAGLQARLIAHAADLLKPGGTLVYSTCSLEPEEGEQQVERLLAARSDII
EEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
RAPIVPGEVEGIDPFITPQGDVRTLPSHWMRGEAERSGLDGFFAARLKRRA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MVRALPCAMKPPSRAHKPARRPGSGSAPAPGRPTAGKPAAATPGLAARILAVDGLEQVLR
CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
HGAALEDALDADVALDPRDRALAYRILATSLRRIGTLRALIAKLMERGLPKSAPRLESVL
CCCHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LAGATQILFMDVPNHAAVGLCVDVARADRNTAGFAGLVNAVLRRLTREADALMVGISPDF
HHCCEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
ADTPEWMGQRWIKAYGLETTRAIAAMHKVEPPLDITVKADPALWAERLSGEVLPTGSVRI
CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCCEEE
LQAGPVRALPGFAEGDWWVQDAAAALPARLLGDVKGLKVADLCAAPGGKTAQLAAAGAIV
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCHHHHHCCCEE
TAVDRSSSRLTRLKENLERLKLSAQVVAGDAADFSGGPFDAVLLDAPCSATGTLRRHPDI
EEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCE
AVNKRPGDLVTLAGLQARLIAHAADLLKPGGTLVYSTCSLEPEEGEQQVERLLAARSDII
EEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
RAPIVPGEVEGIDPFITPQGDVRTLPSHWMRGEAERSGLDGFFAARLKRRA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA