Click here to switch to the map view.

The map label for this gene is tsf [H]

Identifier: 153952055

GI number: 153952055

Start: 496160

End: 497233

Strand: Direct

Name: tsf [H]

Synonym: JJD26997_0548

Alternate gene names: 153952055

Gene position: 496160-497233 (Clockwise)

Preceding gene: 153952052

Following gene: 153951318

Centisome position: 26.89

GC content: 33.8

Gene sequence:

>1074_bases
ATGGCTGAAATTACTGCTGCAATGGTAAAAGAACTCCGCGAAAGTACAGGCGCGGGGATGATGGATTGTAAAAACGCTTT
AAGTGAAACTAATGGAGATTTTGATAAAGCGGTGCAACTTTTAAGAGAAAAAGGTTTAGGTAAGGCTGCTAAAAAAGCAG
ATAGACTTGCTGCAGAAGGTTTGGTAAGTGTAAAAGTAAGTGATGATTTTACAAGTGCAACTGTAAGCGAGATTAATTCC
GAAACAGATTTTGTGGCAAAAAATGATCAGTTTATCGCTTTAACAAAAGATACTACAGCTCATATTCAAAACAATAGCTT
GCAAAGTGTAGAAGAGCTTCACTCAAGTACGATTAATGGTGTAAAATTTGAAGAATATTTAAAAAGTCAAATTGCAACTA
TAGGAGAAAACTTAGTTGTAAGAAGATTTGCAACTTTAAAAGCAGGTGCTAACGGCGTTGTAAATGGTTATATCCATACA
AATGGCCGTGTTGGTGTTGTGATTGCTGCAGCTTGTGATAGCGCTGAAGTAGCTTCAAAATCAAGAGATTTATTAAGACA
AATTTGTATGCATATTGCAGCAATGAGACCAAGTTATTTAAGTTATGAAGATTTGGATATGACTTTTGTTGAAAATGAAT
ACAAAGCCTTGGTTGCTGAACTTGAAAAAGAAAATGAAGAAAGACGCAGACTTAAAGATCCAAATAAACCTGAACATAAA
ATTCCTCAATTTGCAAGTCGCAAACAATTAAGCGATGCAATTTTAAAAGAAGCTGAAGAAAAAATCAAAGAAGAGCTTAA
AACTCAAGGTAAGCCTGAAAAAATTTGGGACAATATTATTCCAGGTAAAATGAATAGCTTTATAGCAGATAATTCTCAAC
TTGATAGTAAGTTTACTTTAATGGGTCAGTTTTATGTAATGGATGATAAAAAAACCGTAGAACAAGTAATCGCCGAAAAA
GAAAAAGAATTTGGCGGAAAAATTAAAATTGTTGAATTTATTTGCTTTGAAGTTGGCGAAGGTTTAGAAAAGAAGACTGA
AGATTTTGCGGCTGAAGTTGCTGCACAACTTTAA

Upstream 100 bases:

>100_bases
AAGCTTTACCAAATGAAGAAAAAGAAATCACTGATGAAGAGAAAAAAGAAGTTTTAGATGAATCGATGAGTGAAGAAGAC
TTCGGTGAGGAGCAAGAATA

Downstream 100 bases:

>100_bases
AAACGGTTAAAAATGGAACTCTTAAGAGCGGAAAATTTAAGCCATAGTTTTGATTATCCGCTTTTTGAGGGTTTAAATCT
TACTTTAAATACCAAAGATT

Product: elongation factor Ts

Products: NA

Alternate protein names: EF-Ts [H]

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREKGLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINS
ETDFVAKNDQFIALTKDTTAHIQNNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALVAELEKENEERRRLKDPNKPEHK
IPQFASRKQLSDAILKEAEEKIKEELKTQGKPEKIWDNIIPGKMNSFIADNSQLDSKFTLMGQFYVMDDKKTVEQVIAEK
EKEFGGKIKIVEFICFEVGEGLEKKTEDFAAEVAAQL

Sequences:

>Translated_357_residues
MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREKGLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINS
ETDFVAKNDQFIALTKDTTAHIQNNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALVAELEKENEERRRLKDPNKPEHK
IPQFASRKQLSDAILKEAEEKIKEELKTQGKPEKIWDNIIPGKMNSFIADNSQLDSKFTLMGQFYVMDDKKTVEQVIAEK
EKEFGGKIKIVEFICFEVGEGLEKKTEDFAAEVAAQL
>Mature_356_residues
AEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREKGLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSE
TDFVAKNDQFIALTKDTTAHIQNNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHTN
GRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALVAELEKENEERRRLKDPNKPEHKI
PQFASRKQLSDAILKEAEEKIKEELKTQGKPEKIWDNIIPGKMNSFIADNSQLDSKFTLMGQFYVMDDKKTVEQVIAEKE
KEFGGKIKIVEFICFEVGEGLEKKTEDFAAEVAAQL

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome [H]

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family [H]

Homologues:

Organism=Homo sapiens, GI171846268, Length=230, Percent_Identity=30, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI291084500, Length=251, Percent_Identity=27.8884462151394, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1786366, Length=355, Percent_Identity=35.7746478873239, Blast_Score=183, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI17561440, Length=218, Percent_Identity=33.4862385321101, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI19921466, Length=226, Percent_Identity=30.5309734513274, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449 [H]

Pfam domain/function: PF00889 EF_TS; PF00627 UBA [H]

EC number: NA

Molecular weight: Translated: 39616; Mature: 39485

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS01126 EF_TS_1 ; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREKGLGKAAKKADRLAAEG
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
LVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHIQNNSLQSVEELHSSTING
EEEEEECCCHHHHHHHHHCCCCCEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHCCC
VKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHTNGRVGVVIAAACDSAEVASK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEECCCHHHHHH
SRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALVAELEKENEERRRLKDPNKPEHK
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHH
IPQFASRKQLSDAILKEAEEKIKEELKTQGKPEKIWDNIIPGKMNSFIADNSQLDSKFTL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHCCCCCCCCEEEE
MGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFICFEVGEGLEKKTEDFAAEVAAQL
EEEEEEECCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREKGLGKAAKKADRLAAEG
CHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
LVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHIQNNSLQSVEELHSSTING
EEEEEECCCHHHHHHHHHCCCCCEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHCCC
VKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHTNGRVGVVIAAACDSAEVASK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEECCCHHHHHH
SRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALVAELEKENEERRRLKDPNKPEHK
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHH
IPQFASRKQLSDAILKEAEEKIKEELKTQGKPEKIWDNIIPGKMNSFIADNSQLDSKFTL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHCCCCCCCCEEEE
MGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFICFEVGEGLEKKTEDFAAEVAAQL
EEEEEEECCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA