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The map label for this gene is traB [H]

Identifier: 153952054

GI number: 153952054

Start: 829512

End: 830852

Strand: Direct

Name: traB [H]

Synonym: JJD26997_0932

Alternate gene names: 153952054

Gene position: 829512-830852 (Clockwise)

Preceding gene: 153952044

Following gene: 153951196

Centisome position: 44.96

GC content: 33.33

Gene sequence:

>1341_bases
ATGAAAAATCCTTTTATAAAGTTTTTTAGCAATGATAAAAGTCCTATCGATGCACAAAAAAATCAAAATAAAAACAAGGT
TTTAATTTTTACAGGTATTTTTGTGATTGCAGGGGCTTTGCTTTTTTTAGCAGGGGGTGGTGATAAAAAAGAATCTAAAG
AAAAAGTAGGCAATTTCAATCTTGTTCAAGATGATCCTATGGCTAAAACAAGATGGGTAGGTGAAGCAAGCAACGATCTT
ACTTTAGCTAAAAAAAGAGTGGATAGCTTAGATACTCGTAATGAAGAGCTTTCAAAACAAGTAAGTGATCTTAAAAAAAT
TATCACTGATATGAAAAAAGAAAATGATGCAAATAAAAGAAATTATGAATTAAATTTAAAAAATATACAAAAAACACAGA
AAAAAGCTACAGAAAATACTCCTGCAACTGTTTTAGAAGACACTCCAAATAATCAAGAAGAAGATTTGTATAAGAATTTT
CCTCAGCCAAATAAAAATACAGCAAATGCACAAAAACCAAGTGATTATGGTTTAACACATTTTGGTGATGTTCCTGAATT
AAATGAGGTTACACAAACAAGATATACGCCAATTCAAGACTCTCTTTCTTTTACAAACATTGCTAAACCTGAAGAAAAGG
AAAAAGTAGAAAAAAAGTCGACTAGGCATGTCATTCCTACAGGCTCGATTGTAAAAGCTGTTTTACTCTCAGGTATGGAT
GCCCCTACGATGACTCAAGCAAAAACTGAGCCATTGCCTGTACTCATGAAAGTTACTGATCTTTCCATTTTGCCAAATCG
ATGGGGTTATGATGTGAATGAATGCTTTTTAATGGGCGAAGGATATGGGGATTTAACAAGCGAAAGAGCATACATTAGAG
TTAATAATATTTCTTGTGTTACTAACAAAGGACAAAAAATTTACATGGCAATGAAGGGTGCTGCAACTGGTGAAGATGGT
AAATTAGGCTTGCGTGGTGAGGTAGTTACCAAACAAGGAGCTTTACTTGCTAGGACTTTAATTGCAGGTTTCTTGCAAGG
TGTAGGAGAAGGTTTTGCCAATCAAAATCAAATTGTAACCCAAAACGGTTTTGGTGGAACTACAACAACAAATAGTAATA
TGAGTGCAAGTGCTACTTTACAAACAGGAGCGTTTAAAGGACTTTCAAAAAGTGCTGAAAAACTTGCAGATTTTTATCTA
AAAATGGCAGATCAAGTTTCCCCTGTAATTGAGATTGCAGCAGGTAGAGAAATTAACATTATTACCACAGCCACTTTGGA
GTTAAAAACTTTAGAAGAGCAGCAGCAAGATAATGTAAAGAAAAATAACAATAAAAAATAA

Upstream 100 bases:

>100_bases
AAGTAAATCATTTATTACCTTATTCTAAAGCACAAATTATAATTATTACTAAAGGCGGAAGAAATACAAATGGTGGTGTT
TTTGATGGGGGTATGTCAAA

Downstream 100 bases:

>100_bases
GGAGAAAAATATATGAAAATCTTTTCTAAAATAATTTTAAGTTCTTTAGCTTTAGCAAGCTTACTTCATGCTCAAACTCT
TATTGAACAACAAGAAGAAT

Product: sex pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MKNPFIKFFSNDKSPIDAQKNQNKNKVLIFTGIFVIAGALLFLAGGGDKKESKEKVGNFNLVQDDPMAKTRWVGEASNDL
TLAKKRVDSLDTRNEELSKQVSDLKKIITDMKKENDANKRNYELNLKNIQKTQKKATENTPATVLEDTPNNQEEDLYKNF
PQPNKNTANAQKPSDYGLTHFGDVPELNEVTQTRYTPIQDSLSFTNIAKPEEKEKVEKKSTRHVIPTGSIVKAVLLSGMD
APTMTQAKTEPLPVLMKVTDLSILPNRWGYDVNECFLMGEGYGDLTSERAYIRVNNISCVTNKGQKIYMAMKGAATGEDG
KLGLRGEVVTKQGALLARTLIAGFLQGVGEGFANQNQIVTQNGFGGTTTTNSNMSASATLQTGAFKGLSKSAEKLADFYL
KMADQVSPVIEIAAGREINIITTATLELKTLEEQQQDNVKKNNNKK

Sequences:

>Translated_446_residues
MKNPFIKFFSNDKSPIDAQKNQNKNKVLIFTGIFVIAGALLFLAGGGDKKESKEKVGNFNLVQDDPMAKTRWVGEASNDL
TLAKKRVDSLDTRNEELSKQVSDLKKIITDMKKENDANKRNYELNLKNIQKTQKKATENTPATVLEDTPNNQEEDLYKNF
PQPNKNTANAQKPSDYGLTHFGDVPELNEVTQTRYTPIQDSLSFTNIAKPEEKEKVEKKSTRHVIPTGSIVKAVLLSGMD
APTMTQAKTEPLPVLMKVTDLSILPNRWGYDVNECFLMGEGYGDLTSERAYIRVNNISCVTNKGQKIYMAMKGAATGEDG
KLGLRGEVVTKQGALLARTLIAGFLQGVGEGFANQNQIVTQNGFGGTTTTNSNMSASATLQTGAFKGLSKSAEKLADFYL
KMADQVSPVIEIAAGREINIITTATLELKTLEEQQQDNVKKNNNKK
>Mature_446_residues
MKNPFIKFFSNDKSPIDAQKNQNKNKVLIFTGIFVIAGALLFLAGGGDKKESKEKVGNFNLVQDDPMAKTRWVGEASNDL
TLAKKRVDSLDTRNEELSKQVSDLKKIITDMKKENDANKRNYELNLKNIQKTQKKATENTPATVLEDTPNNQEEDLYKNF
PQPNKNTANAQKPSDYGLTHFGDVPELNEVTQTRYTPIQDSLSFTNIAKPEEKEKVEKKSTRHVIPTGSIVKAVLLSGMD
APTMTQAKTEPLPVLMKVTDLSILPNRWGYDVNECFLMGEGYGDLTSERAYIRVNNISCVTNKGQKIYMAMKGAATGEDG
KLGLRGEVVTKQGALLARTLIAGFLQGVGEGFANQNQIVTQNGFGGTTTTNSNMSASATLQTGAFKGLSKSAEKLADFYL
KMADQVSPVIEIAAGREINIITTATLELKTLEEQQQDNVKKNNNKK

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 49143; Mature: 49143

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPFIKFFSNDKSPIDAQKNQNKNKVLIFTGIFVIAGALLFLAGGGDKKESKEKVGNFN
CCCCEEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHEEECCCCCHHHHHHCCCCC
LVQDDPMAKTRWVGEASNDLTLAKKRVDSLDTRNEELSKQVSDLKKIITDMKKENDANKR
EECCCCCCHHEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
NYELNLKNIQKTQKKATENTPATVLEDTPNNQEEDLYKNFPQPNKNTANAQKPSDYGLTH
EEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
FGDVPELNEVTQTRYTPIQDSLSFTNIAKPEEKEKVEKKSTRHVIPTGSIVKAVLLSGMD
CCCCCCHHHHHHHCCCCCHHCCCHHCCCCCHHHHHHHHHHCCEECCCHHHHHHHHHCCCC
APTMTQAKTEPLPVLMKVTDLSILPNRWGYDVNECFLMGEGYGDLTSERAYIRVNNISCV
CCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCEEEE
TNKGQKIYMAMKGAATGEDGKLGLRGEVVTKQGALLARTLIAGFLQGVGEGFANQNQIVT
ECCCCEEEEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
QNGFGGTTTTNSNMSASATLQTGAFKGLSKSAEKLADFYLKMADQVSPVIEIAAGREINI
ECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEE
ITTATLELKTLEEQQQDNVKKNNNKK
EEEEEEEHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKNPFIKFFSNDKSPIDAQKNQNKNKVLIFTGIFVIAGALLFLAGGGDKKESKEKVGNFN
CCCCEEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHEEECCCCCHHHHHHCCCCC
LVQDDPMAKTRWVGEASNDLTLAKKRVDSLDTRNEELSKQVSDLKKIITDMKKENDANKR
EECCCCCCHHEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
NYELNLKNIQKTQKKATENTPATVLEDTPNNQEEDLYKNFPQPNKNTANAQKPSDYGLTH
EEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
FGDVPELNEVTQTRYTPIQDSLSFTNIAKPEEKEKVEKKSTRHVIPTGSIVKAVLLSGMD
CCCCCCHHHHHHHCCCCCHHCCCHHCCCCCHHHHHHHHHHCCEECCCHHHHHHHHHCCCC
APTMTQAKTEPLPVLMKVTDLSILPNRWGYDVNECFLMGEGYGDLTSERAYIRVNNISCV
CCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCEEEE
TNKGQKIYMAMKGAATGEDGKLGLRGEVVTKQGALLARTLIAGFLQGVGEGFANQNQIVT
ECCCCEEEEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
QNGFGGTTTTNSNMSASATLQTGAFKGLSKSAEKLADFYLKMADQVSPVIEIAAGREINI
ECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEE
ITTATLELKTLEEQQQDNVKKNNNKK
EEEEEEEHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]