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The map label for this gene is 153951750

Identifier: 153951750

GI number: 153951750

Start: 1210331

End: 1211296

Strand: Direct

Name: 153951750

Synonym: JJD26997_1369

Alternate gene names: NA

Gene position: 1210331-1211296 (Clockwise)

Preceding gene: 153951181

Following gene: 153951806

Centisome position: 65.6

GC content: 29.19

Gene sequence:

>966_bases
ATGTATAAAAAAGAGCTTCAAACCCTACTTTCTAAAGATTCAATACCCAATTTTTTCTTTCTTTATGGAGCAGATAATTT
TCAAAGCGAACTTTATGCTGAATTCATAAAAGAAAAATACAAGCCCGATGAAACTTTAAAACTTTTTTTTGAAGAATACA
ACTTCACTCGTGCGAGTGATTTTTTAAGCGCAGGATCGCTTTTTAGTGAAAAAAAAATGCTCGAAATCAAAACTTCTAAA
AAAATTCCAACAAAAGATCTCAAAATTTTAGTCGAACTTTGCAAAAACAATACGGACAATTTCTTTCTTCTAGAACTTTA
TGATGAAAGCTCAAAGCAAAGCGATATAGAAAAAATTTTCTCTCCTCATTTTGTAAGATTTTTTAAAGTTAACGGAGCTA
AAGAAGGCGTAGAGCTTTTAAGCATAAAAGCAAAACAACTAGGGGTTGAAATCACTCAAAATGCTTTATTTACTCTTTTT
ACAAGTTTTGATGAAAACCTGTATCTTGCTGCGAGTGAGCTTAATAAATTTAGCGGTTTAAGAGTAGATGAAAAAACCAT
AGAACAATACTGCTATAGTTTGAATACAGGAAGTTTTGAAAGCTTTTTTGAGAAAATTTTAAAAAAACAAGACTTTAAAA
GCGATCTTGAAAAAATTTTAGACAATTTTAATGAAATTGCTTTAATCAACTCTTTGCATAATTCTTTTTATCGTTTATTT
AAAATCGCACTTTATACTAAAGTCAATGGTAAAATTGATTTTAAAGAGCTTTTAGGCTACACTCCACCCCCTCAAGTGGG
ACAAAATTTAAGCACTCAAGCCTTCAGTTTAAAAATCGAACAATATAAAGAAATTTTCACTCTTTTACTTAAAAGTGAAT
ACGAGCTTAAAACCAATTCCAAACTCGTAAAAAAAGACTTTTTGATTTCAAATTTACTTCAACTTGCAAGGATTTTAAAA
GGTTAA

Upstream 100 bases:

>100_bases
GTGAATTTGCTAGAAAGTGTTGAAGTACAAATCATGGAAGCGGATATAATTATGGCAAAAATTCATGCCAAAATCACCCA
AAAACTTACAAAGGAAGAAA

Downstream 100 bases:

>100_bases
TCTCCCCTTTAGTATCAATCCACTTTTCACTTTCTTTACTTCTTTTAATTGTCTTAAAATAATTTATTATGATTTATTAT
GATTTAAAATAATTTAAAAT

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MYKKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDETLKLFFEEYNFTRASDFLSAGSLFSEKKMLEIKTSK
KIPTKDLKILVELCKNNTDNFFLLELYDESSKQSDIEKIFSPHFVRFFKVNGAKEGVELLSIKAKQLGVEITQNALFTLF
TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSDLEKILDNFNEIALINSLHNSFYRLF
KIALYTKVNGKIDFKELLGYTPPPQVGQNLSTQAFSLKIEQYKEIFTLLLKSEYELKTNSKLVKKDFLISNLLQLARILK
G

Sequences:

>Translated_321_residues
MYKKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDETLKLFFEEYNFTRASDFLSAGSLFSEKKMLEIKTSK
KIPTKDLKILVELCKNNTDNFFLLELYDESSKQSDIEKIFSPHFVRFFKVNGAKEGVELLSIKAKQLGVEITQNALFTLF
TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSDLEKILDNFNEIALINSLHNSFYRLF
KIALYTKVNGKIDFKELLGYTPPPQVGQNLSTQAFSLKIEQYKEIFTLLLKSEYELKTNSKLVKKDFLISNLLQLARILK
G
>Mature_321_residues
MYKKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDETLKLFFEEYNFTRASDFLSAGSLFSEKKMLEIKTSK
KIPTKDLKILVELCKNNTDNFFLLELYDESSKQSDIEKIFSPHFVRFFKVNGAKEGVELLSIKAKQLGVEITQNALFTLF
TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSDLEKILDNFNEIALINSLHNSFYRLF
KIALYTKVNGKIDFKELLGYTPPPQVGQNLSTQAFSLKIEQYKEIFTLLLKSEYELKTNSKLVKKDFLISNLLQLARILK
G

Specific function: Could be the functional equivalent of DNA polymerase III delta subunit (holA) [H]

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010372 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: 2.7.7.7

Molecular weight: Translated: 37366; Mature: 37366

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDETLKLFFEEYNFTRASD
CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHH
FLSAGSLFSEKKMLEIKTSKKIPTKDLKILVELCKNNTDNFFLLELYDESSKQSDIEKIF
HHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHH
SPHFVRFFKVNGAKEGVELLSIKAKQLGVEITQNALFTLFTSFDENLYLAASELNKFSGL
CCHHEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCC
RVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSDLEKILDNFNEIALINSLHNSFYRLF
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
KIALYTKVNGKIDFKELLGYTPPPQVGQNLSTQAFSLKIEQYKEIFTLLLKSEYELKTNS
HHHHHEECCCCCCHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KLVKKDFLISNLLQLARILKG
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYKKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDETLKLFFEEYNFTRASD
CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHH
FLSAGSLFSEKKMLEIKTSKKIPTKDLKILVELCKNNTDNFFLLELYDESSKQSDIEKIF
HHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHH
SPHFVRFFKVNGAKEGVELLSIKAKQLGVEITQNALFTLFTSFDENLYLAASELNKFSGL
CCHHEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCC
RVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSDLEKILDNFNEIALINSLHNSFYRLF
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
KIALYTKVNGKIDFKELLGYTPPPQVGQNLSTQAFSLKIEQYKEIFTLLLKSEYELKTNS
HHHHHEECCCCCCHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KLVKKDFLISNLLQLARILKG
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]