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The map label for this gene is psd [H]

Identifier: 153951613

GI number: 153951613

Start: 549057

End: 549674

Strand: Direct

Name: psd [H]

Synonym: JJD26997_0606

Alternate gene names: 153951613

Gene position: 549057-549674 (Clockwise)

Preceding gene: 153952359

Following gene: 153951741

Centisome position: 29.76

GC content: 28.32

Gene sequence:

>618_bases
ATGAAAGATTTTATTGCAAAAGATGGATATTTAAGTCTTATTATTTTAAGTTTGATTTTTATTTTTGTGTGGATTTTTTA
TTCTTTTTCCATCTTGCTATTGGCATTAATTGTAATTTGTATTTTTCTTTTTAGAACGCCCAAAAGAGAACCTGTTTGTA
GTGATGAAAAAGCTATTTTTGCACCTATAGATGGTAGGGTTACTAAAATAGAAAATATTCATCATAAAGATTTAGGTGAA
TGTGTTGAAATTACTATTAAAAATGCTCTTTATGATGCTGGAAATTTTAATACACCTTTTGCAATGTCTATAATAGATAT
TCGTTTGCGACATGGGCTTTTTTTGTGCAGTGAATTAAAATCTGTAAAAATGATGAATGAAAGAGCTTTTATTTTGGCAA
AAGTTAAAGAGAATAAAACGATAGCCTTGCGAATCTATGCAGGTTCTTTTGATAGAAAATTAAAGCTCGATAATATTTCT
CATGATTTAAAAGCAGGAGATAGAATGGGTTTTTTAATCAATGGCTCCATAAGTTTACTTTTACCAAAAGATACTAGAAT
TCATATAGGCTTAAATGATGAAATTAAAGCAGGTTCATTGCTAGGCTATTTTGCGTAA

Upstream 100 bases:

>100_bases
CTAAAGTGCGTGAGATTATTAAAGAGTTTGAGGATCAAAATAGTCTACCAACTCATTTGCAAGAACTCGAAGAAGTTAAA
ACTGAAGTTAAAGTAGAAGA

Downstream 100 bases:

>100_bases
GGAAAAATAATGAGTAACAGACCGCAACTAATTTATATTTTACCCAATCTTTTTACAGCTGCTTCAGCTTTTTTAGGAGT
TATTTCTATTATAGCTTCAA

Product: phosphatidylserine decarboxylase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLFRTPKREPVCSDEKAIFAPIDGRVTKIENIHHKDLGE
CVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELKSVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA

Sequences:

>Translated_205_residues
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLFRTPKREPVCSDEKAIFAPIDGRVTKIENIHHKDLGE
CVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELKSVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA
>Mature_205_residues
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLFRTPKREPVCSDEKAIFAPIDGRVTKIENIHHKDLGE
CVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELKSVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 23230; Mature: 23230

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLFRTPKREPVCSDEKAIF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
APIDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELK
ECCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNISHDLKAGDRMGFLINGSISLL
HHHHHCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCCHHCCCCCEEEEEECEEEEE
LPKDTRIHIGLNDEIKAGSLLGYFA
ECCCCEEEEECCCCCCCCCEEEECC
>Mature Secondary Structure
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLFRTPKREPVCSDEKAIF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
APIDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELK
ECCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNISHDLKAGDRMGFLINGSISLL
HHHHHCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCCHHCCCCCEEEEEECEEEEE
LPKDTRIHIGLNDEIKAGSLLGYFA
ECCCCEEEEECCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA