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The map label for this gene is infC [H]

Identifier: 153951486

GI number: 153951486

Start: 202933

End: 203451

Strand: Direct

Name: infC [H]

Synonym: JJD26997_0217

Alternate gene names: 153951486

Gene position: 202933-203451 (Clockwise)

Preceding gene: 153950997

Following gene: 153952442

Centisome position: 11.0

GC content: 32.76

Gene sequence:

>519_bases
TTGAGTAAAGAAAAAGAAGTATTGCTCAATGAAGAAATAAGAGCGGATGAAATCAGATGTGTTGGCGATGATGGCAAGGT
TTATGGTATTATCAGTAGTGATGAAGCTTTAGAAATTGCAAATCGTTTAGGACTTGATCTTGTAATGATAGCTGCAGATG
CTAAGCCACCTGTTTGCAAGATCATGGACTATGGTAAATTCCGTTATCAACAAGAGAAAAAACAAAAAGAAGCAAAGAAA
AAACAAAAAGTGATTGATATAAAAGAAATCAAACTTTCTGTAAAAATTGCTCAAAATGATATTAATTACAAGGTAAAACA
TGCTTTAGAATTTTTAGAACAAGGTAAGCATGTGAGATTTCGTGTGTTCTTAAAAGGACGTGAAATGGCAACTCCTGAAG
CAGGTGTAGTTTTGCTTGAAAAAATTTGGACTATGATAGAAAATGAAGCTAATCGTGACAAAGAGCCAAATTTTGAAGGT
CGTTATGTAAATATGCTTGTAACTCCAAAAAAAGCTTAA

Upstream 100 bases:

>100_bases
GTAGCGTTGCTTTAAGAGATAGAAGAGCTAAAGAACAAAAAAATCTTAGCTTGGATGAATTTATTAAATTAGTTAAGGAG
AAAATGAGTGAGGTATACTT

Downstream 100 bases:

>100_bases
TCCACTTTTGTGGATAAGGCTTTTAAAGGTTTTAAATTTTGAAAGAAAATCCCTCTTTTTTAAAAGAGCAAATTATAACT
TATCTTGGAAATAAAAGAGC

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLGLDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKK
KQKVIDIKEIKLSVKIAQNDINYKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVVLLEKIWTMIENEANRDKEPNFEG
RYVNMLVTPKKA

Sequences:

>Translated_172_residues
MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLGLDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKK
KQKVIDIKEIKLSVKIAQNDINYKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVVLLEKIWTMIENEANRDKEPNFEG
RYVNMLVTPKKA
>Mature_171_residues
SKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLGLDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKK
QKVIDIKEIKLSVKIAQNDINYKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVVLLEKIWTMIENEANRDKEPNFEGR
YVNMLVTPKKA

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=164, Percent_Identity=43.2926829268293, Blast_Score=114, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 19809; Mature: 19678

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLGLDLVMIAADAKPPVCK
CCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHCCCEEEEEEECCCCCEEE
IMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDINYKVKHALEFLEQGKHVRF
EECCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEECCCCCCHHHHHHHHHHCCCCEEE
RVFLKGREMATPEAGVVLLEKIWTMIENEANRDKEPNFEGRYVNMLVTPKKA
EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCC
>Mature Secondary Structure 
SKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLGLDLVMIAADAKPPVCK
CCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHCCCEEEEEEECCCCCEEE
IMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDINYKVKHALEFLEQGKHVRF
EECCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEECCCCCCHHHHHHHHHHCCCCEEE
RVFLKGREMATPEAGVVLLEKIWTMIENEANRDKEPNFEGRYVNMLVTPKKA
EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA