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The map label for this gene is rnpA

Identifier: 153951419

GI number: 153951419

Start: 739889

End: 740215

Strand: Direct

Name: rnpA

Synonym: JJD26997_0821

Alternate gene names: 153951419

Gene position: 739889-740215 (Clockwise)

Preceding gene: 153951017

Following gene: 153951899

Centisome position: 40.1

GC content: 28.13

Gene sequence:

>327_bases
GTGAAAAATTTTGATAAATTTAGCACAAACGAGGAATTTTCATCTGTATATAAAGTAGGTAAAAAATGGCATTGCGAAGG
TGTGATCATTTTTTATCTGAATAGTTATGAAAAAAAAATAGCAGTTGTTGCTAGTAAAAAAGTTGGAAAAGCAGTGGTTA
GAAATCGTTCAAAACGAATTTTAAGGGCTTTGTTTGCTAAGTTTGAAAGATATCTTCAAGATGGCAAATATATTTTTGTA
GCTAAAAATGAAATCACTGAACTTTCTTTTTCTAGGTTAGAAAAAAATCTAAAATGGGGATTGAAAAAACTAGAATGTTT
CAAATGA

Upstream 100 bases:

>100_bases
CAAGAAAACGCACTCATGGTTTCCGTGTTCGTATGAAAACTAAAAATGGTCGCAAGGTGATCAATGCAAGACGTGCTAAA
GGTAGAAAAAGACTTGCTGT

Downstream 100 bases:

>100_bases
TATGCCTAAAAATACTCCGTTTTTATCAGAAATTCTTAAGCCCTTTAAAACCCGCTGCTTGTAGGTATTATCCTAGTTGT
TCTGAGTATGCGCTTTGGCA

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVASKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFV
AKNEITELSFSRLEKNLKWGLKKLECFK

Sequences:

>Translated_108_residues
MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVASKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFV
AKNEITELSFSRLEKNLKWGLKKLECFK
>Mature_108_residues
MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVASKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFV
AKNEITELSFSRLEKNLKWGLKKLECFK

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_CAMJ8 (A8FM14)

Other databases:

- EMBL:   CP000814
- RefSeq:   YP_001482478.1
- ProteinModelPortal:   A8FM14
- SMR:   A8FM14
- STRING:   A8FM14
- GeneID:   5617264
- GenomeReviews:   CP000814_GR
- KEGG:   cju:C8J_0902
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   FECAVIY
- ProtClustDB:   CLSK879014
- BioCyc:   CJEJ407148:C8J_0902-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 12783; Mature: 12783

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVASKKVGKAVVRNRSKRI
CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
LRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLKKLECFK
HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVASKKVGKAVVRNRSKRI
CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
LRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLKKLECFK
HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA