Click here to switch to the map view.

The map label for this gene is nrfA [H]

Identifier: 153951301

GI number: 153951301

Start: 300565

End: 302397

Strand: Direct

Name: nrfA [H]

Synonym: JJD26997_0341

Alternate gene names: 153951301

Gene position: 300565-302397 (Clockwise)

Preceding gene: 153952264

Following gene: 153951830

Centisome position: 16.29

GC content: 34.21

Gene sequence:

>1833_bases
ATGAAAAAAAATATTTTACGCTTGGGTATTGTTGTTTTGGTTTTACTTATAGCGGGAGTTTTATGGCTAAATAATGATAT
CAATCAAAAAAAAGAAGATGAAACAAATAAAAATGCCATTGCAGCAAATGCTGATTTTTCTTTGCTTAGTGATGATGATC
CAAATTTTGAAAAATGGGGTAAGGTTTTTCCAGAGCAACTAAAAATGTATTTAACGGTTGAAAAAGAAGAGCCTAAGGCT
ACTGAATTTGGTGGTAATTTAGCTTATTCAAAATTGATTCGCTTTCCTCAATTAACCATACTTTGGGCAGGATATCCTTT
TAGTCTTGATTTCAATGAAGAAAGAGGGCATTTTTGGGTTCAAGTAGATCAAATGAAAACAGCAAGAAACAACAAAGATT
TTCTTAATGCCCATGGACTTGCTGCTTTTAAAGGTCAACCCGCAGCTTGTATGAATTGTCATAGTGGATGGACTCCATGG
CTTATAAAGAATGTTGCTAAAGGGGATTTTACTGCTTTTAACTCTACAAATTATTGGACTATGATTAAAAATATCCCAGC
CGTTGATGGTATAGTAGAAAATTCACCTGAACATGCAGGCCCACATGGTGGCAAAAGAATGGGCGTAACTTGTGCAGATT
GTCACAATCCAAATGATATGAGTTTAAGACTTACTCGTCCAGCGGCTATTAATGCTTTAGTTTCTAGGGGATATGAAAAA
GATCCAGTACAAGGTGTAAAAGCTACAAGAGAAGAAATGAGAACTTTAGTTTGCTCTCAATGCCATGTTGAATACTATTT
TAAACCAACAGGAGAAAAAGTAAAAGTAATGGGTGAAATTATTGTAGACGATAGTTCTAAAAAATGGTGGAATGGAACTC
AGAAAAATTATGATGAGTATGAATTTTGGAGAGATGGTAATAAAGCTAAAGAGATTGAAACCGATGGTATAGTTTTAACT
TTTCCTTGGAGTGAGTGGAAAAAAGGACAACCATTTAGAATTGAAATGCTAGATGATTATTATGATAAAGTTCGTGGAGT
ATTTGGAGCTGATTTTACTCATAAATTAACAGGGGCGCAAATTATTAAAATTCAACATCCAGAAAGTGAACTTTATAGTG
GCGGTGTGCATGCTGCAAATGGAGTAAGTTGCGTGGATTGTCATATGCCTTATGTTAGAGAAGGGGCTAAAAAGGTTACT
CAACACAATATCACTTCTCCTTTAAGAGATATTAACTCTGCTTGTAAGTCTTGTCATAAACAAAGCGAAGATTATTTAAA
AGCTCAAGTGCTTGACATACAAAATAGCATTGCGCATGATCAAAGAACAGCAGAGTACACAATTGTTAGTTTGATTATGG
ATACCAAAAAACTACGCGATGAACTAGGCAATATGGAAAAATTCCAAAGCGATGGAAAAGCTGATGCGAAAAAAATTAGC
GAAGAGTTAAAAGAAGTTTTAGAACTTCATCGTAAAGCTCAAATGAGAGCGGATTTTGTTAATGCTGAAAACTCAACTGG
TTTCCATAATCCTCGCGAAGCTTCAAGAATGTTATTGCAAGCTGTTGATATGGCAAGAATGGGACAAACTAAACTTGTAG
AAATCGCCGCGGCAAATGGAATTAAAGATTTTAAAACTTCAAATTTAGGTTTTAAAGATATTCAAAAATTTAATCCAGGA
GAGCTTTATTATAAAGTAGATGTTAATAATCATAAAGCTGGAGAGCGTTACTATGCAGATGAAAAAGATGTTAATGGCAA
TCCTCCAAAAGAACTTTTAGAGCATGATAAAGAGCTCGCTCCTTATAATTATCAAGTGATTGATAAAAAATAA

Upstream 100 bases:

>100_bases
TCAATGCTACAACAAATCCACATGCAGACAAGTCATTAAATTGTGCTTCTTGTCATAAAGATGTTGGACATAAACACGGA
ATTTAACAAGGAGAAGATGA

Downstream 100 bases:

>100_bases
TTCTTAAGCCCTATAAATCATAGGGCTTTTTCTTTTCTTATTTTAAAAAATATAAACTTTTTATTTAAAATTTACTTTTA
TTTCACTTTGTTTTGTCAAA

Product: cytochrome c552

Products: NA

Alternate protein names: Ammonia-forming cytochrome c nitrite reductase; Cytochrome c nitrite reductase [H]

Number of amino acids: Translated: 610; Mature: 610

Protein sequence:

>610_residues
MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDETNKNAIAANADFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKA
TEFGGNLAYSKLIRFPQLTILWAGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPNDMSLRLTRPAAINALVSRGYEK
DPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKVMGEIIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLT
FPWSEWKKGQPFRIEMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYVREGAKKVT
QHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSIAHDQRTAEYTIVSLIMDTKKLRDELGNMEKFQSDGKADAKKIS
EELKEVLELHRKAQMRADFVNAENSTGFHNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFKDIQKFNPG
ELYYKVDVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK

Sequences:

>Translated_610_residues
MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDETNKNAIAANADFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKA
TEFGGNLAYSKLIRFPQLTILWAGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPNDMSLRLTRPAAINALVSRGYEK
DPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKVMGEIIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLT
FPWSEWKKGQPFRIEMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYVREGAKKVT
QHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSIAHDQRTAEYTIVSLIMDTKKLRDELGNMEKFQSDGKADAKKIS
EELKEVLELHRKAQMRADFVNAENSTGFHNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFKDIQKFNPG
ELYYKVDVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK
>Mature_610_residues
MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDETNKNAIAANADFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKA
TEFGGNLAYSKLIRFPQLTILWAGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPNDMSLRLTRPAAINALVSRGYEK
DPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKVMGEIIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLT
FPWSEWKKGQPFRIEMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYVREGAKKVT
QHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSIAHDQRTAEYTIVSLIMDTKKLRDELGNMEKFQSDGKADAKKIS
EELKEVLELHRKAQMRADFVNAENSTGFHNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFKDIQKFNPG
ELYYKVDVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK

Specific function: Plays a role in nitrite reduction [H]

COG id: COG3303

COG function: function code P; Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c-552 family [H]

Homologues:

Organism=Escherichia coli, GI1790506, Length=454, Percent_Identity=29.7356828193833, Blast_Score=168, Evalue=7e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003321
- InterPro:   IPR017570
- InterPro:   IPR011031 [H]

Pfam domain/function: PF02335 Cytochrom_C552 [H]

EC number: =1.7.2.2 [H]

Molecular weight: Translated: 69282; Mature: 69282

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDETNKNAIAANADFSLLSDDDPNFEKWG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCHHHHH
KVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILWAGYPFSLDFNEERGHFWV
HHCHHHEEEEEEEECCCCCHHHCCCCHHHHHHHCCCCEEEEEECCCEEECCCCCCCEEEE
QVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPWLIKNVAKGDFTAFNSTNYWT
EEHHHHHHCCCCCHHCCCCEEEECCCCCHHCCCCCCCCHHHHHHHCCCCCEEECCCCEEE
MIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPNDMSLRLTRPAAINALVSRGYEK
EECCCCCCCCHHCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCHHHHHHHHCCCCC
DPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKVMGEIIVDDSSKKWWNGTQKNYDEY
CCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHH
EFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRIEMLDDYYDKVRGVFGADFTHKLTGAQ
HHHCCCCCCCEECCCCEEEEECHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCEECCCEE
IIKIQHPESELYSGGVHAANGVSCVDCHMPYVREGAKKVTQHNITSPLRDINSACKSCHK
EEEEECCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
QSEDYLKAQVLDIQNSIAHDQRTAEYTIVSLIMDTKKLRDELGNMEKFQSDGKADAKKIS
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHH
EELKEVLELHRKAQMRADFVNAENSTGFHNPREASRMLLQAVDMARMGQTKLVEIAAANG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
IKDFKTSNLGFKDIQKFNPGELYYKVDVNNHKAGERYYADEKDVNGNPPKELLEHDKELA
CCHHCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHCC
PYNYQVIDKK
CCCEEEECCC
>Mature Secondary Structure
MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDETNKNAIAANADFSLLSDDDPNFEKWG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCHHHHH
KVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILWAGYPFSLDFNEERGHFWV
HHCHHHEEEEEEEECCCCCHHHCCCCHHHHHHHCCCCEEEEEECCCEEECCCCCCCEEEE
QVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPWLIKNVAKGDFTAFNSTNYWT
EEHHHHHHCCCCCHHCCCCEEEECCCCCHHCCCCCCCCHHHHHHHCCCCCEEECCCCEEE
MIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPNDMSLRLTRPAAINALVSRGYEK
EECCCCCCCCHHCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCHHHHHHHHCCCCC
DPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKVMGEIIVDDSSKKWWNGTQKNYDEY
CCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHH
EFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRIEMLDDYYDKVRGVFGADFTHKLTGAQ
HHHCCCCCCCEECCCCEEEEECHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCEECCCEE
IIKIQHPESELYSGGVHAANGVSCVDCHMPYVREGAKKVTQHNITSPLRDINSACKSCHK
EEEEECCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
QSEDYLKAQVLDIQNSIAHDQRTAEYTIVSLIMDTKKLRDELGNMEKFQSDGKADAKKIS
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHH
EELKEVLELHRKAQMRADFVNAENSTGFHNPREASRMLLQAVDMARMGQTKLVEIAAANG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
IKDFKTSNLGFKDIQKFNPGELYYKVDVNNHKAGERYYADEKDVNGNPPKELLEHDKELA
CCHHCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHCC
PYNYQVIDKK
CCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA