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The map label for this gene is intA [H]

Identifier: 153951041

GI number: 153951041

Start: 268399

End: 269601

Strand: Direct

Name: intA [H]

Synonym: JJD26997_0292

Alternate gene names: 153951041

Gene position: 268399-269601 (Clockwise)

Preceding gene: 153952161

Following gene: 153951821

Centisome position: 14.55

GC content: 26.68

Gene sequence:

>1203_bases
ATGCTTACTCAAAAAGATATAGACAATTTAGAAATAAAAGATAAAAGGTATATGATTAGTGTAGGGGAGCCAAAAGAATT
ATATGTCCGAGTTAATCCAACGGGTAAAAAAGTTTTTTATTTAAGGGCTTCAAAATTCAAACAATTTATAACTATTGGAG
AATGTCAAAAAGGTATTTTAAACGTTACTAATGCAAGGGAAAAGGCAAAAGAGCTCTTAAAATCAATGTATGATGGGAGT
TTTGTTTCAAAAAGCGAAAAAGGAGTAACTTTAAATAAAGCCAATGAACTTTATATAGAAATTAAAGCAAAAAAATTAAG
TAGGGCTACAATCAAAAAAGAGCAATTAGTTTATGGAAAATATTTCAATTCAACTTTAGGAGATAAAGCTATAAATGATT
TGAAAAAAGATGATTTTTTGCCTATTTTTGATCTTATGTATAAAAAAGGAATTTTTGAGACTATTAGTAGAAGTATATCT
TTTTTATGTAGAGTTTTAGAATTTTGTAGACAAAGAGGCGACTTAAAAACAGATATAATACTTCAATTGAAAGATTTAAA
GAAATTTTACAATGAAGCAAATCACAATAAAGTTAAACATTTTAAAGCTATAGTAGAAGAACAAGAAATAAAAAATATGT
TAGAATGTATGAAAGAATATAAAAATCATCCACGGACAAATACAACTATAATTAATGCAATTTATTTTACGCTTTTAACA
GCACAAAGAAGTAAAAATATACGTTTTGCTAAATGGAGTGATATTGACTTTAAAAACAATCTTTGGGTAATAAAAGCGGA
TGAAATGAAAGTGTCTAGCAATGGAGATAATATTATCCCATTAAATAAATATGCGTTAAAAGTTTTAGAAATTCAAAGAA
TTTTAAATGGGAACAAGGAGTATATTTTCACTAATAATAACGGGATTATTAGTGAAAGTTTTGGAGTGAAATTTTTTAAA
ACATATAATTTAGAACATACTATACATGGTTTTAGAAGCACTTTTAGGAGTATTTGCACTGAAAAAAGTGATGAGCTTAT
AAAACTTGGAATAGGTAAAGATATAGCCGAAATGATATTGCACCATATAAATGGCAATGAAGTAACAAGGGCTTATGATA
GAGCCAAGGCAATTGATTTAAGAGTAAAACTTATGCAATGGTATGGAAATTACTTAAACTCTCTTTGTGGTTTTGATTTT
TAA

Upstream 100 bases:

>100_bases
TTGCAATTTTTTCTATTTTTTCTTATAATTCTGTAGCCATTTATGTAGCCAAAGTAAAAAAGCTTATTTTGGCTACAAAA
ACACTAAAAAAGGTTTTTCA

Downstream 100 bases:

>100_bases
AAAGAATGAGTATTTAACCATTTAATAATGGCATTTTTTTCATATCTTATTGTTTTTCCTATTTTAATATAAGGGATTTT
ATTTTCTTTTCTAAGTCTCC

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLTQKDIDNLEIKDKRYMISVGEPKELYVRVNPTGKKVFYLRASKFKQFITIGECQKGILNVTNAREKAKELLKSMYDGS
FVSKSEKGVTLNKANELYIEIKAKKLSRATIKKEQLVYGKYFNSTLGDKAINDLKKDDFLPIFDLMYKKGIFETISRSIS
FLCRVLEFCRQRGDLKTDIILQLKDLKKFYNEANHNKVKHFKAIVEEQEIKNMLECMKEYKNHPRTNTTIINAIYFTLLT
AQRSKNIRFAKWSDIDFKNNLWVIKADEMKVSSNGDNIIPLNKYALKVLEIQRILNGNKEYIFTNNNGIISESFGVKFFK
TYNLEHTIHGFRSTFRSICTEKSDELIKLGIGKDIAEMILHHINGNEVTRAYDRAKAIDLRVKLMQWYGNYLNSLCGFDF

Sequences:

>Translated_400_residues
MLTQKDIDNLEIKDKRYMISVGEPKELYVRVNPTGKKVFYLRASKFKQFITIGECQKGILNVTNAREKAKELLKSMYDGS
FVSKSEKGVTLNKANELYIEIKAKKLSRATIKKEQLVYGKYFNSTLGDKAINDLKKDDFLPIFDLMYKKGIFETISRSIS
FLCRVLEFCRQRGDLKTDIILQLKDLKKFYNEANHNKVKHFKAIVEEQEIKNMLECMKEYKNHPRTNTTIINAIYFTLLT
AQRSKNIRFAKWSDIDFKNNLWVIKADEMKVSSNGDNIIPLNKYALKVLEIQRILNGNKEYIFTNNNGIISESFGVKFFK
TYNLEHTIHGFRSTFRSICTEKSDELIKLGIGKDIAEMILHHINGNEVTRAYDRAKAIDLRVKLMQWYGNYLNSLCGFDF
>Mature_400_residues
MLTQKDIDNLEIKDKRYMISVGEPKELYVRVNPTGKKVFYLRASKFKQFITIGECQKGILNVTNAREKAKELLKSMYDGS
FVSKSEKGVTLNKANELYIEIKAKKLSRATIKKEQLVYGKYFNSTLGDKAINDLKKDDFLPIFDLMYKKGIFETISRSIS
FLCRVLEFCRQRGDLKTDIILQLKDLKKFYNEANHNKVKHFKAIVEEQEIKNMLECMKEYKNHPRTNTTIINAIYFTLLT
AQRSKNIRFAKWSDIDFKNNLWVIKADEMKVSSNGDNIIPLNKYALKVLEIQRILNGNKEYIFTNNNGIISESFGVKFFK
TYNLEHTIHGFRSTFRSICTEKSDELIKLGIGKDIAEMILHHINGNEVTRAYDRAKAIDLRVKLMQWYGNYLNSLCGFDF

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=277, Percent_Identity=24.5487364620939, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788690, Length=408, Percent_Identity=24.0196078431373, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46608; Mature: 46608

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTQKDIDNLEIKDKRYMISVGEPKELYVRVNPTGKKVFYLRASKFKQFITIGECQKGIL
CCCCCCCCCCEEECCEEEEEECCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHH
NVTNAREKAKELLKSMYDGSFVSKSEKGVTLNKANELYIEIKAKKLSRATIKKEQLVYGK
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEEEHHHHHHHHHHHHHHHHHH
YFNSTLGDKAINDLKKDDFLPIFDLMYKKGIFETISRSISFLCRVLEFCRQRGDLKTDII
HHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LQLKDLKKFYNEANHNKVKHFKAIVEEQEIKNMLECMKEYKNHPRTNTTIINAIYFTLLT
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AQRSKNIRFAKWSDIDFKNNLWVIKADEMKVSSNGDNIIPLNKYALKVLEIQRILNGNKE
HHHCCCCEEEEECCCCCCCCEEEEEECCEEEECCCCCEEECHHHHHHHHHHHHHHCCCCC
YIFTNNNGIISESFGVKFFKTYNLEHTIHGFRSTFRSICTEKSDELIKLGIGKDIAEMIL
EEEECCCCEEECCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH
HHINGNEVTRAYDRAKAIDLRVKLMQWYGNYLNSLCGFDF
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTQKDIDNLEIKDKRYMISVGEPKELYVRVNPTGKKVFYLRASKFKQFITIGECQKGIL
CCCCCCCCCCEEECCEEEEEECCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHH
NVTNAREKAKELLKSMYDGSFVSKSEKGVTLNKANELYIEIKAKKLSRATIKKEQLVYGK
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEEEHHHHHHHHHHHHHHHHHH
YFNSTLGDKAINDLKKDDFLPIFDLMYKKGIFETISRSISFLCRVLEFCRQRGDLKTDII
HHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LQLKDLKKFYNEANHNKVKHFKAIVEEQEIKNMLECMKEYKNHPRTNTTIINAIYFTLLT
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AQRSKNIRFAKWSDIDFKNNLWVIKADEMKVSSNGDNIIPLNKYALKVLEIQRILNGNKE
HHHCCCCEEEEECCCCCCCCEEEEEECCEEEECCCCCEEECHHHHHHHHHHHHHHCCCCC
YIFTNNNGIISESFGVKFFKTYNLEHTIHGFRSTFRSICTEKSDELIKLGIGKDIAEMIL
EEEECCCCEEECCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH
HHINGNEVTRAYDRAKAIDLRVKLMQWYGNYLNSLCGFDF
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]