| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153950743
Identifier: 153950743
GI number: 153950743
Start: 964768
End: 965217
Strand: Direct
Name: 153950743
Synonym: YpsIP31758_0803
Alternate gene names: NA
Gene position: 964768-965217 (Clockwise)
Preceding gene: 153950286
Following gene: 153950380
Centisome position: 20.43
GC content: 53.33
Gene sequence:
>450_bases ATGCCGGACGCCTCCTCGCCGTCACTGTATGAGCAATTGCTGGGCAATTTCACTGGCGGGCTTGAACTGCATCAGGTCAG TGAAGCTAATCAGGTCATTCTCTCGGTGCTCGATAATATGCAGCGCATTCTCAATTGCCGGGCGGGGACACTCAGTCATC TGCCCGATTATGGTCTGCCAGATATGAGTGAAATCCTGCAAGGGCTACCGGGCAGCGCACACGCGCTGTTGACCACTCTA TCCACTGCATTGCTGAAATACGAGCCGCGTCTGAAAAGTTTGCAGGTGTTGCTGTTACCGCAGACCGCTCCCGGCCATCT GGAGTACGCCATTGAGGCGGAACTGAAAGGTCTGGGACTGGTGCGTTATGGCACGGCATTTATGCCAGAAGGCCGGGTGT TGATTCGTCATCTTAAACAGCAGTATCTTGATAAAACAATGGGAGTCTGA
Upstream 100 bases:
>100_bases ACTGGCGTCTGATTCTGACGCTGGACGACCTGCATCCCGATAAACCTCGGACCCTTGAGTTGGGTAATAACAGCCTGATA TTGCGGGCGGAGACAAAGTA
Downstream 100 bases:
>100_bases AGTACATTATCGGGTTCTGGACTCTGGAGTCCCTGCTCTTTATTTCTGTTTCTGATAAGGATATTTCGATGAAACTGCAC ACCAGCATCAGGCTGGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: GPW/Gp25 Family Protein; Type VI Secretion System Lysozyme Protein; Type VI Secretion System Protein; Type VI Secretion System Lysozyme-Related Family Protein; Type VI Secretion System Lysozyme-Like Protein
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MPDASSPSLYEQLLGNFTGGLELHQVSEANQVILSVLDNMQRILNCRAGTLSHLPDYGLPDMSEILQGLPGSAHALLTTL STALLKYEPRLKSLQVLLLPQTAPGHLEYAIEAELKGLGLVRYGTAFMPEGRVLIRHLKQQYLDKTMGV
Sequences:
>Translated_149_residues MPDASSPSLYEQLLGNFTGGLELHQVSEANQVILSVLDNMQRILNCRAGTLSHLPDYGLPDMSEILQGLPGSAHALLTTL STALLKYEPRLKSLQVLLLPQTAPGHLEYAIEAELKGLGLVRYGTAFMPEGRVLIRHLKQQYLDKTMGV >Mature_148_residues PDASSPSLYEQLLGNFTGGLELHQVSEANQVILSVLDNMQRILNCRAGTLSHLPDYGLPDMSEILQGLPGSAHALLTTLS TALLKYEPRLKSLQVLLLPQTAPGHLEYAIEAELKGLGLVRYGTAFMPEGRVLIRHLKQQYLDKTMGV
Specific function: Unknown
COG id: COG3518
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16322; Mature: 16191
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDASSPSLYEQLLGNFTGGLELHQVSEANQVILSVLDNMQRILNCRAGTLSHLPDYGLP CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC DMSEILQGLPGSAHALLTTLSTALLKYEPRLKSLQVLLLPQTAPGHLEYAIEAELKGLGL CHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCEEEEEECCCCCCCEEEEEEHHHCCCCC VRYGTAFMPEGRVLIRHLKQQYLDKTMGV HHHCCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PDASSPSLYEQLLGNFTGGLELHQVSEANQVILSVLDNMQRILNCRAGTLSHLPDYGLP CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC DMSEILQGLPGSAHALLTTLSTALLKYEPRLKSLQVLLLPQTAPGHLEYAIEAELKGLGL CHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCEEEEEECCCCCCCEEEEEEHHHCCCCC VRYGTAFMPEGRVLIRHLKQQYLDKTMGV HHHCCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA