Click here to switch to the map view.

The map label for this gene is pemA [H]

Identifier: 153950671

GI number: 153950671

Start: 3961106

End: 3962191

Strand: Reverse

Name: pemA [H]

Synonym: YpsIP31758_3511

Alternate gene names: 153950671

Gene position: 3962191-3961106 (Counterclockwise)

Preceding gene: 153949305

Following gene: 153950250

Centisome position: 83.89

GC content: 47.42

Gene sequence:

>1086_bases
ATGCCAATTAATGCTCTGAGTAAGACACTATTATTAGGATTGATATCATTTGCCGCTTTAGGTGAAGTCAGCGCGGCACA
GTACAATGCTGTGGTTTCTGCCATGGCGCAGGGCGATGAGTTCTCTTCAATTAATGCAGCGTTACAATCAGCACCGCCAG
ATAGTTCTCCGTTTGTTATTTTCCTTAAAAAAGGCGTTTATACCGAACGGCTTGAGGTCAATCGTGACAATGTGACGCTG
AAAGGTGAGGAGCGTGATACGACGGTGATTGGCGCGAATACCGCCGCGGGTATGCTCAACCCACAAGGGACGAAGTGGGG
AACCTCTGGCAGCAGCACGGTATTGGTGAATGCCGCCAATTTTACTGCAGAAAATTTGACGATTCTTAATGACTTCGATT
TCCCTGCTAATCAGGCGAAAGCAGAGGGTGATCCGACGAAATTAAAAGATACGCAGGCGGTGGCGCTGTTATTAGCAGAA
AAAAGTGATAAAGCCCGTTTCAGGCAAGTCAAACTTGAGGGGTACCAAGATACGCTTTATAGCAAAACGGGCAGTCGTAG
CTACTTTACCGATTGTGACATCAGTGGCCACGTCGATTTTATTTTTGGCTCAGGGGTGACGGTATTTGACCGCTGCAATA
TTATTGCCCGTGATCGCCGTGATATCTCCCCACCTTACGGTTACATTACGGCACCCAGTACCCAAAATACCGCACCTTAT
GGTCTGATTGTCCTCAATAGTCGTTTAACCAAAGAACCAGGTGTGCCTGCTAAAAGTTTTGCCTTAGGGCGCCCGTGGCA
CCCTACTACAGCATTTGATGATGGCCGTTATGCTGATCCTGCGGCTATCGGACAGGCGGTATTTATCAATACCGTAATGG
ATGATCATATTTATGGCTGGGATAAAATGTCTGGAAAAGATAAGCAAGGCGAGAAAGTTTGGTTCTATCCGCAAGACTCT
CGCTTCTTTGAAGCGAACAATCAGGGACCAGGGGCTGAAATTAATGAGGGGCGGCGTCAGTTGTCTGCTGAGCAACTAAA
AGCGTTCACATTGCCAATGATTTTTCCCGACTGGACCGTTCAGTAG

Upstream 100 bases:

>100_bases
TTAACGTGCTTTTTATCAACAGCTAGACGTGATTTTTATCAATGGCTAATAGCGAACAATCGAGTTTAATCTGCTGGATG
TTAAAAACTGAGGGTAATTC

Downstream 100 bases:

>100_bases
CCTTATATTAACCGCGGTTTACTGCCTTTAAGCTGGCGGATAATCCAAGAGGAGGCGTTTCACGTTTTACTTCTCATCAT
CATCTGATGCGGCCTATACC

Product: pectinesterase A

Products: NA

Alternate protein names: PE A; Pectin methylesterase A [H]

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MPINALSKTLLLGLISFAALGEVSAAQYNAVVSAMAQGDEFSSINAALQSAPPDSSPFVIFLKKGVYTERLEVNRDNVTL
KGEERDTTVIGANTAAGMLNPQGTKWGTSGSSTVLVNAANFTAENLTILNDFDFPANQAKAEGDPTKLKDTQAVALLLAE
KSDKARFRQVKLEGYQDTLYSKTGSRSYFTDCDISGHVDFIFGSGVTVFDRCNIIARDRRDISPPYGYITAPSTQNTAPY
GLIVLNSRLTKEPGVPAKSFALGRPWHPTTAFDDGRYADPAAIGQAVFINTVMDDHIYGWDKMSGKDKQGEKVWFYPQDS
RFFEANNQGPGAEINEGRRQLSAEQLKAFTLPMIFPDWTVQ

Sequences:

>Translated_361_residues
MPINALSKTLLLGLISFAALGEVSAAQYNAVVSAMAQGDEFSSINAALQSAPPDSSPFVIFLKKGVYTERLEVNRDNVTL
KGEERDTTVIGANTAAGMLNPQGTKWGTSGSSTVLVNAANFTAENLTILNDFDFPANQAKAEGDPTKLKDTQAVALLLAE
KSDKARFRQVKLEGYQDTLYSKTGSRSYFTDCDISGHVDFIFGSGVTVFDRCNIIARDRRDISPPYGYITAPSTQNTAPY
GLIVLNSRLTKEPGVPAKSFALGRPWHPTTAFDDGRYADPAAIGQAVFINTVMDDHIYGWDKMSGKDKQGEKVWFYPQDS
RFFEANNQGPGAEINEGRRQLSAEQLKAFTLPMIFPDWTVQ
>Mature_360_residues
PINALSKTLLLGLISFAALGEVSAAQYNAVVSAMAQGDEFSSINAALQSAPPDSSPFVIFLKKGVYTERLEVNRDNVTLK
GEERDTTVIGANTAAGMLNPQGTKWGTSGSSTVLVNAANFTAENLTILNDFDFPANQAKAEGDPTKLKDTQAVALLLAEK
SDKARFRQVKLEGYQDTLYSKTGSRSYFTDCDISGHVDFIFGSGVTVFDRCNIIARDRRDISPPYGYITAPSTQNTAPYG
LIVLNSRLTKEPGVPAKSFALGRPWHPTTAFDDGRYADPAAIGQAVFINTVMDDHIYGWDKMSGKDKQGEKVWFYPQDSR
FFEANNQGPGAEINEGRRQLSAEQLKAFTLPMIFPDWTVQ

Specific function: Involved in maceration and soft-rotting of plant tissue [H]

COG id: COG4677

COG function: function code G; Pectin methylesterase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pectinesterase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012334
- InterPro:   IPR011050
- InterPro:   IPR018040
- InterPro:   IPR000070 [H]

Pfam domain/function: PF01095 Pectinesterase [H]

EC number: =3.1.1.11 [H]

Molecular weight: Translated: 39409; Mature: 39277

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPINALSKTLLLGLISFAALGEVSAAQYNAVVSAMAQGDEFSSINAALQSAPPDSSPFVI
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEE
FLKKGVYTERLEVNRDNVTLKGEERDTTVIGANTAAGMLNPQGTKWGTSGSSTVLVNAAN
EEECCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC
FTAENLTILNDFDFPANQAKAEGDPTKLKDTQAVALLLAEKSDKARFRQVKLEGYQDTLY
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCEEEEEEECCCHHHHH
SKTGSRSYFTDCDISGHVDFIFGSGVTVFDRCNIIARDRRDISPPYGYITAPSTQNTAPY
HCCCCCCEEECCCCCCCEEEEEECCEEEEECCCEEEECCCCCCCCCCEEECCCCCCCCCE
GLIVLNSRLTKEPGVPAKSFALGRPWHPTTAFDDGRYADPAAIGQAVFINTVMDDHIYGW
EEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEHHHCCCCCC
DKMSGKDKQGEKVWFYPQDSRFFEANNQGPGAEINEGRRQLSAEQLKAFTLPMIFPDWTV
CCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHEECCEECCCCCC
Q
C
>Mature Secondary Structure 
PINALSKTLLLGLISFAALGEVSAAQYNAVVSAMAQGDEFSSINAALQSAPPDSSPFVI
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEE
FLKKGVYTERLEVNRDNVTLKGEERDTTVIGANTAAGMLNPQGTKWGTSGSSTVLVNAAN
EEECCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC
FTAENLTILNDFDFPANQAKAEGDPTKLKDTQAVALLLAEKSDKARFRQVKLEGYQDTLY
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCEEEEEEECCCHHHHH
SKTGSRSYFTDCDISGHVDFIFGSGVTVFDRCNIIARDRRDISPPYGYITAPSTQNTAPY
HCCCCCCEEECCCCCCCEEEEEECCEEEEECCCEEEECCCCCCCCCCEEECCCCCCCCCE
GLIVLNSRLTKEPGVPAKSFALGRPWHPTTAFDDGRYADPAAIGQAVFINTVMDDHIYGW
EEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEHHHCCCCCC
DKMSGKDKQGEKVWFYPQDSRFFEANNQGPGAEINEGRRQLSAEQLKAFTLPMIFPDWTV
CCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHEECCEECCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8370537 [H]