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The map label for this gene is oprF [H]

Identifier: 153950607

GI number: 153950607

Start: 937113

End: 938834

Strand: Direct

Name: oprF [H]

Synonym: YpsIP31758_0781

Alternate gene names: 153950607

Gene position: 937113-938834 (Clockwise)

Preceding gene: 153946938

Following gene: 153950535

Centisome position: 19.84

GC content: 57.03

Gene sequence:

>1722_bases
ATGAGTCCGTTGTGGCGATATGGGTTATGGCTATGGGCGGGTCTTCTGGCGGGCATATTGTGTCTGGCGTTCTTGCCTTT
CTCCCCGTTAGTCGGCTGGCTTATGTTGTTGCCGGTTGCCCTTATTTGTCTGGTGGGGATAGGGCGGGCGCGGCGTCAAC
CGAACAGGGCATTCTCTGAACCGCTATTCTCCGGACTAGCATCCGAAAATCCGCTTCCACCTGAAAACCACCGTTTACCG
GTGGTGTTGGTCTGCGGTGATGGTCTGACGTCATTATTTGGCACCGAGAGGATGCTGCAGACTGCGCAAGGCTGCTGGCT
ACGAGTGGATGAGATAAACAGCCTACAACTGTTTACCCGACAGCTACTGTGGCAACGGCCGGAATGGGCCGCTCAGTTGG
CGGTGATGATGGTGGTGAACCCGCAGCAACGCAGCGATGAACGCCAGCTGGCAGCCGATTTACAGGAGCTGCGTTGGCAA
CTGATGCAACTGTGTAGCGATACCCGCCATCGCATTCCCTTACTGGTGAGTAGCACGGTGGCCACACTGATGGCCCATGA
TGCGGTTTGGTTGTCACAACAGCAAACTCCGCCGCTGACGCTCTGGTCAACCGTCTCGACGCCGGGATCTCTGGCCGACT
GGCAGCGCACACAAAGCAATGTTGTACAGGCGGAACGACTGAAACAGACGGTGTTGTTCAGCTGCCATCATGACTGGCTG
AAAGCACAAGTGCTCCCGGTGTTGCAGGCGCGCAATGAGGATGTGGCACCGGTCGCTGTACAGCAGATTATTCAGCAGCA
GGTTGCTGGTCTGCCAGATATAGAGCAAAGCTCCCTCTGGCAACATTGGCTAACCGCCCATACCTCGCTGACACAGGTGT
CCGGTTGGCATCCACCGTCGACGGCTGCGCATGACGTATTACCCTTGCCGGATTTTGTTTTTTCAGTGCTTCCCCTCGGC
AGTGGCGTGTCGTCACGCCGTCGGGTGCTGCGCCATAGCGTCACCTTACTGACGCTGGCGGCGATGGTGGCTTTGTGCAG
CAGTGCCTGGCAAAACCGGCAACTGTTGCAGCGGGTGACCTTTGATATCCGCCATTACTACAGCGTCGCCATGACCGATC
ACGCCCCTAAAGCGCAGGCCGTTGCGGTATTACGGGGTGATGCGGAGGAACTTGATAACGAGTTCCGCAATGGTGAGCCG
CTGCGTCTGGGACTGGGTTTGTATCAAGGATGGCGTCTGCGACTGCCTTTACTGGCCGCAGTGAAAACTTATGTGCCACC
ACCGCCTGCGATAGATAAAGAAACACCCACTACAGTCCGCCTTGATAGCCTGTCACTGTTTGATGTGGGCAAATTCCAGC
TCAAACCCGGCAGCATCAAGATGCTGGTTGATGCATTGATGAATATCAGAGCCAAACCCGGCTGGCTGATTGTGGTCGCC
GGGCATACCGACATTACCGGTGATGCACAGGCCAACCAAATTCTGTCGCTTAAGCGCGCCGAAGCATTACGCGACTGGAT
GCTATCAACCAGCGACGTCTCGCCGACCTGCTTTGCGGTGCAAGGCTACGGGGCGACACGCCCGGTCGCGACTAACGAGT
CAGCGGAAGGCCGCGCGGCCAACCGCCGTGTCGAAATTAGTCTGGTACCGCAGGCTGATGCCTGTCAGGTGCCAGAAACA
GTAAACCGGTCGCAGGAACACGCGACCTCACTCAGTAAGTAA

Upstream 100 bases:

>100_bases
TGCGACTGGGGTTGGCTGCGCTGATGGTCGCGCTGCTGTGGTGGGGTCTTGACCACTGGCTATCTGGTTTGTTACTGACA
TTGTTACCGGGGCCAATGTG

Downstream 100 bases:

>100_bases
CAAGGAGTTAACCATGGCAATTCCAGTCTATCTGTGGCTGAAAGACGACGGCGGTGCGGACATCAAGGGTTCTGTTGATG
TGCAAAGCCGTGAAGGCAGC

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 573; Mature: 572

Protein sequence:

>573_residues
MSPLWRYGLWLWAGLLAGILCLAFLPFSPLVGWLMLLPVALICLVGIGRARRQPNRAFSEPLFSGLASENPLPPENHRLP
VVLVCGDGLTSLFGTERMLQTAQGCWLRVDEINSLQLFTRQLLWQRPEWAAQLAVMMVVNPQQRSDERQLAADLQELRWQ
LMQLCSDTRHRIPLLVSSTVATLMAHDAVWLSQQQTPPLTLWSTVSTPGSLADWQRTQSNVVQAERLKQTVLFSCHHDWL
KAQVLPVLQARNEDVAPVAVQQIIQQQVAGLPDIEQSSLWQHWLTAHTSLTQVSGWHPPSTAAHDVLPLPDFVFSVLPLG
SGVSSRRRVLRHSVTLLTLAAMVALCSSAWQNRQLLQRVTFDIRHYYSVAMTDHAPKAQAVAVLRGDAEELDNEFRNGEP
LRLGLGLYQGWRLRLPLLAAVKTYVPPPPAIDKETPTTVRLDSLSLFDVGKFQLKPGSIKMLVDALMNIRAKPGWLIVVA
GHTDITGDAQANQILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPVATNESAEGRAANRRVEISLVPQADACQVPET
VNRSQEHATSLSK

Sequences:

>Translated_573_residues
MSPLWRYGLWLWAGLLAGILCLAFLPFSPLVGWLMLLPVALICLVGIGRARRQPNRAFSEPLFSGLASENPLPPENHRLP
VVLVCGDGLTSLFGTERMLQTAQGCWLRVDEINSLQLFTRQLLWQRPEWAAQLAVMMVVNPQQRSDERQLAADLQELRWQ
LMQLCSDTRHRIPLLVSSTVATLMAHDAVWLSQQQTPPLTLWSTVSTPGSLADWQRTQSNVVQAERLKQTVLFSCHHDWL
KAQVLPVLQARNEDVAPVAVQQIIQQQVAGLPDIEQSSLWQHWLTAHTSLTQVSGWHPPSTAAHDVLPLPDFVFSVLPLG
SGVSSRRRVLRHSVTLLTLAAMVALCSSAWQNRQLLQRVTFDIRHYYSVAMTDHAPKAQAVAVLRGDAEELDNEFRNGEP
LRLGLGLYQGWRLRLPLLAAVKTYVPPPPAIDKETPTTVRLDSLSLFDVGKFQLKPGSIKMLVDALMNIRAKPGWLIVVA
GHTDITGDAQANQILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPVATNESAEGRAANRRVEISLVPQADACQVPET
VNRSQEHATSLSK
>Mature_572_residues
SPLWRYGLWLWAGLLAGILCLAFLPFSPLVGWLMLLPVALICLVGIGRARRQPNRAFSEPLFSGLASENPLPPENHRLPV
VLVCGDGLTSLFGTERMLQTAQGCWLRVDEINSLQLFTRQLLWQRPEWAAQLAVMMVVNPQQRSDERQLAADLQELRWQL
MQLCSDTRHRIPLLVSSTVATLMAHDAVWLSQQQTPPLTLWSTVSTPGSLADWQRTQSNVVQAERLKQTVLFSCHHDWLK
AQVLPVLQARNEDVAPVAVQQIIQQQVAGLPDIEQSSLWQHWLTAHTSLTQVSGWHPPSTAAHDVLPLPDFVFSVLPLGS
GVSSRRRVLRHSVTLLTLAAMVALCSSAWQNRQLLQRVTFDIRHYYSVAMTDHAPKAQAVAVLRGDAEELDNEFRNGEPL
RLGLGLYQGWRLRLPLLAAVKTYVPPPPAIDKETPTTVRLDSLSLFDVGKFQLKPGSIKMLVDALMNIRAKPGWLIVVAG
HTDITGDAQANQILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPVATNESAEGRAANRRVEISLVPQADACQVPETV
NRSQEHATSLSK

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=37.5, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 63639; Mature: 63508

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLWRYGLWLWAGLLAGILCLAFLPFSPLVGWLMLLPVALICLVGIGRARRQPNRAFSE
CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHH
PLFSGLASENPLPPENHRLPVVLVCGDGLTSLFGTERMLQTAQGCWLRVDEINSLQLFTR
HHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
QLLWQRPEWAAQLAVMMVVNPQQRSDERQLAADLQELRWQLMQLCSDTRHRIPLLVSSTV
HHHHCCCHHHHHHEEHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ATLMAHDAVWLSQQQTPPLTLWSTVSTPGSLADWQRTQSNVVQAERLKQTVLFSCHHDWL
HHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQVLPVLQARNEDVAPVAVQQIIQQQVAGLPDIEQSSLWQHWLTAHTSLTQVSGWHPPS
HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
TAAHDVLPLPDFVFSVLPLGSGVSSRRRVLRHSVTLLTLAAMVALCSSAWQNRQLLQRVT
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDIRHYYSVAMTDHAPKAQAVAVLRGDAEELDNEFRNGEPLRLGLGLYQGWRLRLPLLAA
HHHHHHHHEEECCCCCCHHHHHEECCCHHHHHHHHCCCCCEEEECCCCCCCEECHHHHHH
VKTYVPPPPAIDKETPTTVRLDSLSLFDVGKFQLKPGSIKMLVDALMNIRAKPGWLIVVA
HHHCCCCCCCCCCCCCCEEEECCEEEEECCCEEECCCHHHHHHHHHHHCCCCCCEEEEEE
GHTDITGDAQANQILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPVATNESAEGRAA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
NRRVEISLVPQADACQVPETVNRSQEHATSLSK
CCEEEEEECCCCCCCCCCHHHCCCHHHHHHCCC
>Mature Secondary Structure 
SPLWRYGLWLWAGLLAGILCLAFLPFSPLVGWLMLLPVALICLVGIGRARRQPNRAFSE
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHH
PLFSGLASENPLPPENHRLPVVLVCGDGLTSLFGTERMLQTAQGCWLRVDEINSLQLFTR
HHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
QLLWQRPEWAAQLAVMMVVNPQQRSDERQLAADLQELRWQLMQLCSDTRHRIPLLVSSTV
HHHHCCCHHHHHHEEHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ATLMAHDAVWLSQQQTPPLTLWSTVSTPGSLADWQRTQSNVVQAERLKQTVLFSCHHDWL
HHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQVLPVLQARNEDVAPVAVQQIIQQQVAGLPDIEQSSLWQHWLTAHTSLTQVSGWHPPS
HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
TAAHDVLPLPDFVFSVLPLGSGVSSRRRVLRHSVTLLTLAAMVALCSSAWQNRQLLQRVT
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDIRHYYSVAMTDHAPKAQAVAVLRGDAEELDNEFRNGEPLRLGLGLYQGWRLRLPLLAA
HHHHHHHHEEECCCCCCHHHHHEECCCHHHHHHHHCCCCCEEEECCCCCCCEECHHHHHH
VKTYVPPPPAIDKETPTTVRLDSLSLFDVGKFQLKPGSIKMLVDALMNIRAKPGWLIVVA
HHHCCCCCCCCCCCCCCEEEECCEEEEECCCEEECCCHHHHHHHHHHHCCCCCCEEEEEE
GHTDITGDAQANQILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPVATNESAEGRAA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
NRRVEISLVPQADACQVPETVNRSQEHATSLSK
CCEEEEEECCCCCCCCCCHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]