Click here to switch to the map view.

The map label for this gene is ybaK [H]

Identifier: 153950572

GI number: 153950572

Start: 3409994

End: 3410473

Strand: Direct

Name: ybaK [H]

Synonym: YpsIP31758_3029

Alternate gene names: 153950572

Gene position: 3409994-3410473 (Clockwise)

Preceding gene: 153947061

Following gene: 153947976

Centisome position: 72.2

GC content: 47.71

Gene sequence:

>480_bases
ATGACACCTGCCGTTGTTCTACTGGAAAAACAAAAGGTTCCGTTTACATTGCATCCCTATCATCATGATGCAACGGAAAC
GCATTTTGGTGATGAGGCCGTTAAAAAGTTAGGGCTTAATGCTGATCAGGTTTATAAAACATTGCTGGTCGCACTCAATA
GCGATGCTAAAAATCTGGCTGTTGCTGTCACGCCGGTCGCTACCCAACTTGATCTGAAAAAAGTTGCCAGGGCGCTGGGG
GCAAAAAAAGCTGAGATGGCTGATCCGCAGTTGGCACAGCGTACGACAGGCTATCTAATTGGTGGCATCAGCCCATTAGG
GCAGAAAAAACGCCTACCCACCGTGATTGACAGCCAAGCTCAAGAGTTCGCCACTATCTTTGTTTCTGGCGGTAAGCGCG
GCTTAGATATTGAATTGGCCGCAGTGGATTTATGCCGCTTATTACAGGGTGTTTTTGCGGATATTGCCAAGCGGGATTGA

Upstream 100 bases:

>100_bases
ATTATGCTGATTTTGTTGGGTTAATTTTTATCCGTGCCGCATCAATGATGTGTAAGATAACCAACCTGAATAAATTTTCA
TTTTTAATTGGATGTTTATT

Downstream 100 bases:

>100_bases
GTCATCACTCCATCATATTCACGCTACGTTATATCCTGCGATCCACCGAGACTATGAAGGAAAGAATGAGTTTAAAACTC
ATCAGACTGCTGACAAACCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MTPAVVLLEKQKVPFTLHPYHHDATETHFGDEAVKKLGLNADQVYKTLLVALNSDAKNLAVAVTPVATQLDLKKVARALG
AKKAEMADPQLAQRTTGYLIGGISPLGQKKRLPTVIDSQAQEFATIFVSGGKRGLDIELAAVDLCRLLQGVFADIAKRD

Sequences:

>Translated_159_residues
MTPAVVLLEKQKVPFTLHPYHHDATETHFGDEAVKKLGLNADQVYKTLLVALNSDAKNLAVAVTPVATQLDLKKVARALG
AKKAEMADPQLAQRTTGYLIGGISPLGQKKRLPTVIDSQAQEFATIFVSGGKRGLDIELAAVDLCRLLQGVFADIAKRD
>Mature_158_residues
TPAVVLLEKQKVPFTLHPYHHDATETHFGDEAVKKLGLNADQVYKTLLVALNSDAKNLAVAVTPVATQLDLKKVARALGA
KKAEMADPQLAQRTTGYLIGGISPLGQKKRLPTVIDSQAQEFATIFVSGGKRGLDIELAAVDLCRLLQGVFADIAKRD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=159, Percent_Identity=77.3584905660377, Blast_Score=251, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17129; Mature: 16998

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAVVLLEKQKVPFTLHPYHHDATETHFGDEAVKKLGLNADQVYKTLLVALNSDAKNLA
CCCEEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEE
VAVTPVATQLDLKKVARALGAKKAEMADPQLAQRTTGYLIGGISPLGQKKRLPTVIDSQA
EEECCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHH
QEFATIFVSGGKRGLDIELAAVDLCRLLQGVFADIAKRD
HHHEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPAVVLLEKQKVPFTLHPYHHDATETHFGDEAVKKLGLNADQVYKTLLVALNSDAKNLA
CCEEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEE
VAVTPVATQLDLKKVARALGAKKAEMADPQLAQRTTGYLIGGISPLGQKKRLPTVIDSQA
EEECCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHH
QEFATIFVSGGKRGLDIELAAVDLCRLLQGVFADIAKRD
HHHEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]