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The map label for this gene is lsrC [H]

Identifier: 153950553

GI number: 153950553

Start: 3976403

End: 3977458

Strand: Direct

Name: lsrC [H]

Synonym: YpsIP31758_3522

Alternate gene names: 153950553

Gene position: 3976403-3977458 (Clockwise)

Preceding gene: 153947106

Following gene: 153950060

Centisome position: 84.19

GC content: 53.12

Gene sequence:

>1056_bases
ATGCTGAAATTTATTCAGAATAATCGTGAAGGTACCGCGCTACTGGCCATTCTCACCCTATTTGCCCTATTGGGGATTAT
TGACCGCAACTATTTCAGCTTGCAGACCTTCACCATGATTTTCAGCAGCGCACAGATCCTGATCCTGCTGGCCATCGGGG
CCACCCTGGTGATGTTGACCCGCAATATCGACGTTTCCGTGGGCTCCATCACCGGTTTATGCGCGGTGACCGTCGGTATG
GCGCTGAATGCCGGTTTTGGCCTGGCGGCATCTTGCTTGTTCGCCTTGTTGGTCGGCATGGTAGCGGGCTTTTTTAACGG
CATTTTAGTGACCTGGCTGCGCATTCCGGCCATTGTCGCCACGCTGGGTACGCTTGGGTTATACCGTGGCCTAATGCTAC
TGCTAACAGGCGGTAAGTGGATCGAAGGATTACCGGCGGACCTGAAAAGTTTATCAACCCCCATTCTGTTTTCTATCTCG
CCCATTGGCTGGCTAGCGATGTTGCTGATCCTTGCTATGGCCTGGCTGTTGGGCAACACCGCCTTTGGCCGCAGTTTCTA
TGCCACGGGGGATAACTTACAAGGGGCGCGTCAGTTGGGGGTCCGTACCGACAGTATCCGCATTTTTGCCTTCTCAATGA
ACGGCGTGATGGCCGCACTGGCTGGGATCGTCTTCGCTTCCCAAATTGGCTTTATCCCTAACCAAACAGGCAACGGGCTG
GAAATGAAGGCCATTGCCGCCTGCGTGTTAGGCGGGATCAGCCTACTTGGTGGGACGGGGACCATTATTGGTGCCATTTT
GGGCGCTTTCCTGCTGACACAAATCGATAGCGTACTGGTGTTACTGCGCCTACCGGCCTGGTGGAATGACTTTATTACCG
GTTTGGTGCTGCTGGGGGTGTTGGTATTCGATGGCCGTCTGCGTTGTGCTGTTGAGCGTAATATCCGCCAACAGAAATAT
GCCCGCTTCACTGCCCGAGCCATTATTAGTGATAAAAAAACAACCGTTAGCGATAACACTCCAGCGGCTAGCAATAAAAA
GAAGGCGGCATTATGA

Upstream 100 bases:

>100_bases
TGAATGTCGATACCATCATGCATATGGCGTTTGGTGAGCACCGTTCTGTGAGTGAACCTCAGGGCGGCACCGCCTCCTCG
GCTGAAAATAAGGGCGCATC

Downstream 100 bases:

>100_bases
ATCTCTACCGACGTTATGGATGGGAACTGACTCTGGCGGCGCTGCTGGTGCTGGAAATCCTGCTATTTGGTTTATCGAAT
TCGCGCATGTTGGATATCAA

Product: ABC transporter permease

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVTVGM
ALNAGFGLAASCLFALLVGMVAGFFNGILVTWLRIPAIVATLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSIS
PIGWLAMLLILAMAWLLGNTAFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFITGLVLLGVLVFDGRLRCAVERNIRQQKY
ARFTARAIISDKKTTVSDNTPAASNKKKAAL

Sequences:

>Translated_351_residues
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVTVGM
ALNAGFGLAASCLFALLVGMVAGFFNGILVTWLRIPAIVATLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSIS
PIGWLAMLLILAMAWLLGNTAFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFITGLVLLGVLVFDGRLRCAVERNIRQQKY
ARFTARAIISDKKTTVSDNTPAASNKKKAAL
>Mature_351_residues
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVTVGM
ALNAGFGLAASCLFALLVGMVAGFFNGILVTWLRIPAIVATLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSIS
PIGWLAMLLILAMAWLLGNTAFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFITGLVLLGVLVFDGRLRCAVERNIRQQKY
ARFTARAIISDKKTTVSDNTPAASNKKKAAL

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=350, Percent_Identity=74.8571428571429, Blast_Score=475, Evalue=1e-135,
Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=31.8327974276527, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789992, Length=348, Percent_Identity=26.7241379310345, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI145693152, Length=267, Percent_Identity=30.3370786516854, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788896, Length=304, Percent_Identity=29.9342105263158, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790524, Length=301, Percent_Identity=27.906976744186, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082395, Length=306, Percent_Identity=31.0457516339869, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI145693214, Length=283, Percent_Identity=34.6289752650177, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787794, Length=297, Percent_Identity=27.9461279461279, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=28.7009063444109, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37253; Mature: 37253

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLT
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIDVSVGSITGLCAVTVGMALNAGFGLAASCLFALLVGMVAGFFNGILVTWLRIPAIVA
CCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSISPIGWLAMLLILAMAWLLGNT
HHHHHHHHHHHHHHHCCCCHHCCCCHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCH
AFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
HCCCCEEECCCCCCHHHHHCCEECCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFITGLVLLGV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LVFDGRLRCAVERNIRQQKYARFTARAIISDKKTTVSDNTPAASNKKKAAL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLT
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIDVSVGSITGLCAVTVGMALNAGFGLAASCLFALLVGMVAGFFNGILVTWLRIPAIVA
CCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSISPIGWLAMLLILAMAWLLGNT
HHHHHHHHHHHHHHHCCCCHHCCCCHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCH
AFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
HCCCCEEECCCCCCHHHHHCCEECCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFITGLVLLGV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LVFDGRLRCAVERNIRQQKYARFTARAIISDKKTTVSDNTPAASNKKKAAL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA