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The map label for this gene is syd

Identifier: 153950422

GI number: 153950422

Start: 1207283

End: 1207834

Strand: Direct

Name: syd

Synonym: YpsIP31758_1005

Alternate gene names: 153950422

Gene position: 1207283-1207834 (Clockwise)

Preceding gene: 153949986

Following gene: 153950240

Centisome position: 25.56

GC content: 44.93

Gene sequence:

>552_bases
ATGGACTTGAATATTTCAACGGCACTTCGCAGTTTTACTCAACGCTATATTGATTTATGGCAGCAGCAAACCGGGCATTT
ACCCGCAAGTAAAGATCTATATGGCGTTCCTTCACCTTGTATTGTGGCGACGGGGGAGGATCAGGTATTTTGGCAACCTC
AGGCGTTTCTGCCAGAAGCGACGTTGACCAATATTGAACGGGCGTTGGAGATTCAGCTACATCCCGATATTCATGATTTT
TACACTCAGCAATACGCTGGCGATATGATGGCCGATTTGGGAAACCATCGTTTTACATTGCTGCAAGTGTGGAGTGAGGA
TGATTTCATCCGTTTACAGGAAAATCTGATTGGCCACTTAGTTACACAGAAAAGGCTAAAGCTCTCGCCAACGTTATTTT
TAGCGACTACCTCGTCGGAAATGACGATGGCTTCATTATGTAATGTCAGCGGAAATGTTGTTTTGGAGCAATTTGGTAGT
GATAAACGCACACTGCTGGCTTCAACGCTCAGTCACTTCTTAGATGCATTACGGCCGGTATTGCCTGAGTAA

Upstream 100 bases:

>100_bases
GCGCTAGTTTATCAATTTATGCCGCACTTAACTGTATTTCTGAGCTGGGGCCAGTTACCACTCAGGTGCAGGGCAAGCCG
CCGCGATACAGAGAATAAGA

Downstream 100 bases:

>100_bases
CCCCATGGTTTTCACTTATTAGCGTGTTACTGGTGTGCGAGATCTCTCACACCAGCTGTGAGACATCACTTCTATTCTTT
CTATGTAAAATTCTCGTGTT

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MDLNISTALRSFTQRYIDLWQQQTGHLPASKDLYGVPSPCIVATGEDQVFWQPQAFLPEATLTNIERALEIQLHPDIHDF
YTQQYAGDMMADLGNHRFTLLQVWSEDDFIRLQENLIGHLVTQKRLKLSPTLFLATTSSEMTMASLCNVSGNVVLEQFGS
DKRTLLASTLSHFLDALRPVLPE

Sequences:

>Translated_183_residues
MDLNISTALRSFTQRYIDLWQQQTGHLPASKDLYGVPSPCIVATGEDQVFWQPQAFLPEATLTNIERALEIQLHPDIHDF
YTQQYAGDMMADLGNHRFTLLQVWSEDDFIRLQENLIGHLVTQKRLKLSPTLFLATTSSEMTMASLCNVSGNVVLEQFGS
DKRTLLASTLSHFLDALRPVLPE
>Mature_183_residues
MDLNISTALRSFTQRYIDLWQQQTGHLPASKDLYGVPSPCIVATGEDQVFWQPQAFLPEATLTNIERALEIQLHPDIHDF
YTQQYAGDMMADLGNHRFTLLQVWSEDDFIRLQENLIGHLVTQKRLKLSPTLFLATTSSEMTMASLCNVSGNVVLEQFGS
DKRTLLASTLSHFLDALRPVLPE

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=181, Percent_Identity=56.353591160221, Blast_Score=218, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_YERP3 (A7FFG1)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001399989.1
- STRING:   A7FFG1
- GeneID:   5385030
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_1005
- NMPDR:   fig|349747.3.peg.1538
- eggNOG:   NOG05748
- HOGENOM:   HBG298615
- OMA:   FANVEHA
- ProtClustDB:   PRK04968
- BioCyc:   YPSE349747:YPSIP31758_1005-MONOMER
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 20708; Mature: 20708

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNISTALRSFTQRYIDLWQQQTGHLPASKDLYGVPSPCIVATGEDQVFWQPQAFLPEA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEECCHHHCCCH
TLTNIERALEIQLHPDIHDFYTQQYAGDMMADLGNHRFTLLQVWSEDDFIRLQENLIGHL
HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHH
VTQKRLKLSPTLFLATTSSEMTMASLCNVSGNVVLEQFGSDKRTLLASTLSHFLDALRPV
HHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHC
LPE
CCC
>Mature Secondary Structure
MDLNISTALRSFTQRYIDLWQQQTGHLPASKDLYGVPSPCIVATGEDQVFWQPQAFLPEA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEECCHHHCCCH
TLTNIERALEIQLHPDIHDFYTQQYAGDMMADLGNHRFTLLQVWSEDDFIRLQENLIGHL
HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHH
VTQKRLKLSPTLFLATTSSEMTMASLCNVSGNVVLEQFGSDKRTLLASTLSHFLDALRPV
HHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHC
LPE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA