| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153950332
Identifier: 153950332
GI number: 153950332
Start: 876682
End: 877905
Strand: Direct
Name: 153950332
Synonym: YpsIP31758_0715
Alternate gene names: NA
Gene position: 876682-877905 (Clockwise)
Preceding gene: 153946940
Following gene: 153948567
Centisome position: 18.56
GC content: 55.07
Gene sequence:
>1224_bases ATGCGCATATCCTCAGAGTCTGACGCTCGCTCAAGCGGGCTTACATCGTCTACCCATTGGCCTTTAGCGTTCTGCGTTGG GTTACTGGGCATCGGGCAAAACGGTTTATTAGTGGTGTTACCGGTATTGGTAAGCCGCACTCATCTGTCATTGTCGGTGT GGGCGGGTCTATTGACACTTGGCTCAATGCTATTTTTAGTGGGATCGGCATGGTGGGGCCGGCAATCGGAGATCCGTGGC TGCAAATTTGTTGTCATCATGGCACTGGCAGGTTACTTGCTTAGCTTTGTTTTATTGGCGCTGGCGGTGTGGGGGTTGTC AGCAGGGTGGTTATCGGAAATGGCCGGTCTGGGCTGGCTAATCGTGGCTCGTATTATTTATGGCCTGACCGTCTCTGGTA TGGTGCCCGCTAGCCAGACCTGGGCACTACAGCGTGCCGGTTATGAGCAACGGATGGCGGCGCTGGCGACCATCAGTTCG GGGCTGAGCTGTGGCCGTCTGCTCGGCCCATTGTGTGCCGCCCTCGCGCTCTCAATACACCCGATAGCCCCCCTGTGGCT GATGGCAATTACACCACTGATCGCACTGCTGGTGGTGTATCGCCAATACAATGACCCGCCGTTACCCCCAGTGGTGCATC AACAAAATCGTTTACGCCTCAATATGTTGCCTTATTTACTGTGCGCGTTGTTGCTGGCAGCAACTGTCAGCCTGATGCAA CTTGGCCTGGCACCTCACCTAAGTCAATTGTTTAGCCATTCGGCCACCACGGTGAGCCACCACGTGGCCATTTTGCTTAG CATAGCCGCGGGTTGTACGTTGCTGGCACAGTTTCTGGTGGTTCGCCCACAACGTTTTACGCCACCTCAGTTGCTGCTAG TGGCAGCCTTGCTCATGGTGCTTGGCTTGGGGCTGATGTGTGTTCAACCGCTGGTACTATTCTATCTAGGTTGTGCGCTG GCTTCTTTCGGCGCCGCGATGGCGACACCGGGTTACCAACTGATGTTGAATGACCGGTTATCTACTGGCAAAGGCTCCGG CGTGATCGCTACCAGCCATACATTGGGCTATGGCATGAGTGCATTGATGGTGCCGGTAGTCGCAAAATTTTATGGTGAGT CACAGTTGGTAGCCGCGGCGTTCATGATGGCCATTTTGTTGGGGGGGATCAGTGGCTGGCTGTGGTGCCAGCATCGAACA ACCGCCCATTCTGTGGGAGAGTAA
Upstream 100 bases:
>100_bases ATATCAATAGTGGTTATCATTATCAATTGGAATATGATACGATTTTTCAATAAATCTCCTTCAAAAAACCACACTTTTAT TAACGGTTAATTTACTTTTA
Downstream 100 bases:
>100_bases CTGGCGCTGCCCGGCCAGCATCGGTGACAAACGGCTGACGTGGGTTGGTCCGTTAGCAGTGATGGTCGCGCCGCCCGATG ATGAGCAGGTGTTGGCTACT
Product: major facilitator transporter
Products: NA
Alternate protein names: Permease; Facilitator Superfamily Transporter; Multidrug-Efflux Transporter; MFS Transporter; Transport Protein ShiF
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MRISSESDARSSGLTSSTHWPLAFCVGLLGIGQNGLLVVLPVLVSRTHLSLSVWAGLLTLGSMLFLVGSAWWGRQSEIRG CKFVVIMALAGYLLSFVLLALAVWGLSAGWLSEMAGLGWLIVARIIYGLTVSGMVPASQTWALQRAGYEQRMAALATISS GLSCGRLLGPLCAALALSIHPIAPLWLMAITPLIALLVVYRQYNDPPLPPVVHQQNRLRLNMLPYLLCALLLAATVSLMQ LGLAPHLSQLFSHSATTVSHHVAILLSIAAGCTLLAQFLVVRPQRFTPPQLLLVAALLMVLGLGLMCVQPLVLFYLGCAL ASFGAAMATPGYQLMLNDRLSTGKGSGVIATSHTLGYGMSALMVPVVAKFYGESQLVAAAFMMAILLGGISGWLWCQHRT TAHSVGE
Sequences:
>Translated_407_residues MRISSESDARSSGLTSSTHWPLAFCVGLLGIGQNGLLVVLPVLVSRTHLSLSVWAGLLTLGSMLFLVGSAWWGRQSEIRG CKFVVIMALAGYLLSFVLLALAVWGLSAGWLSEMAGLGWLIVARIIYGLTVSGMVPASQTWALQRAGYEQRMAALATISS GLSCGRLLGPLCAALALSIHPIAPLWLMAITPLIALLVVYRQYNDPPLPPVVHQQNRLRLNMLPYLLCALLLAATVSLMQ LGLAPHLSQLFSHSATTVSHHVAILLSIAAGCTLLAQFLVVRPQRFTPPQLLLVAALLMVLGLGLMCVQPLVLFYLGCAL ASFGAAMATPGYQLMLNDRLSTGKGSGVIATSHTLGYGMSALMVPVVAKFYGESQLVAAAFMMAILLGGISGWLWCQHRT TAHSVGE >Mature_407_residues MRISSESDARSSGLTSSTHWPLAFCVGLLGIGQNGLLVVLPVLVSRTHLSLSVWAGLLTLGSMLFLVGSAWWGRQSEIRG CKFVVIMALAGYLLSFVLLALAVWGLSAGWLSEMAGLGWLIVARIIYGLTVSGMVPASQTWALQRAGYEQRMAALATISS GLSCGRLLGPLCAALALSIHPIAPLWLMAITPLIALLVVYRQYNDPPLPPVVHQQNRLRLNMLPYLLCALLLAATVSLMQ LGLAPHLSQLFSHSATTVSHHVAILLSIAAGCTLLAQFLVVRPQRFTPPQLLLVAALLMVLGLGLMCVQPLVLFYLGCAL ASFGAAMATPGYQLMLNDRLSTGKGSGVIATSHTLGYGMSALMVPVVAKFYGESQLVAAAFMMAILLGGISGWLWCQHRT TAHSVGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43281; Mature: 43281
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRISSESDARSSGLTSSTHWPLAFCVGLLGIGQNGLLVVLPVLVSRTHLSLSVWAGLLTL CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GSMLFLVGSAWWGRQSEIRGCKFVVIMALAGYLLSFVLLALAVWGLSAGWLSEMAGLGWL HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHH IVARIIYGLTVSGMVPASQTWALQRAGYEQRMAALATISSGLSCGRLLGPLCAALALSIH HHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC PIAPLWLMAITPLIALLVVYRQYNDPPLPPVVHQQNRLRLNMLPYLLCALLLAATVSLMQ CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LGLAPHLSQLFSHSATTVSHHVAILLSIAAGCTLLAQFLVVRPQRFTPPQLLLVAALLMV HCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LGLGLMCVQPLVLFYLGCALASFGAAMATPGYQLMLNDRLSTGKGSGVIATSHTLGYGMS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHH ALMVPVVAKFYGESQLVAAAFMMAILLGGISGWLWCQHRTTAHSVGE HHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCCC >Mature Secondary Structure MRISSESDARSSGLTSSTHWPLAFCVGLLGIGQNGLLVVLPVLVSRTHLSLSVWAGLLTL CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GSMLFLVGSAWWGRQSEIRGCKFVVIMALAGYLLSFVLLALAVWGLSAGWLSEMAGLGWL HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHH IVARIIYGLTVSGMVPASQTWALQRAGYEQRMAALATISSGLSCGRLLGPLCAALALSIH HHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC PIAPLWLMAITPLIALLVVYRQYNDPPLPPVVHQQNRLRLNMLPYLLCALLLAATVSLMQ CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LGLAPHLSQLFSHSATTVSHHVAILLSIAAGCTLLAQFLVVRPQRFTPPQLLLVAALLMV HCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LGLGLMCVQPLVLFYLGCALASFGAAMATPGYQLMLNDRLSTGKGSGVIATSHTLGYGMS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHH ALMVPVVAKFYGESQLVAAAFMMAILLGGISGWLWCQHRTTAHSVGE HHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA