| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is insA [H]
Identifier: 153950170
GI number: 153950170
Start: 885448
End: 885711
Strand: Direct
Name: insA [H]
Synonym: YpsIP31758_0724
Alternate gene names: 153950170
Gene position: 885448-885711 (Clockwise)
Preceding gene: 153947380
Following gene: 153947373
Centisome position: 18.75
GC content: 48.11
Gene sequence:
>264_bases ATGGCTTGCATTAATGTTCATTGTCCCCGTTGTGATTCTGCTTTGGTTTGTCGACATGGTCAGAACCCTAAGGGCCAAAG CCGTTTCCGCTGCCGTGAGTGCCGCTCTGTATTCCAACTGACCTACACTTATCAGGCCAGAAAGCCCGGAGTTAAAGGGC AGATCGTTGATATGGCCTTTAACGGCGCAGGTGTGTGGGATATGGCAAGAACGCTAAAAATCGGTATCAATACCGTTATC CGCACTTTAAAAAACTCTTGCTGA
Upstream 100 bases:
>100_bases GGTAAAGAATATAAATTAAAAATAGCCGAATAATATTAATTTCGGTAATGACTCCAATTGGTTGAATTTGATGTACAATG CGATTTTTTGAGGTTTGCTC
Downstream 100 bases:
>100_bases AGCGAATAACGTCCTCGCCAGTCGCTCATCTGTGAACTCGATGAGCAGTGGAGTTTTGTCGGCAACAAGGCCCATCAGTA GAAACTACGGAGTCATCAAT
Product: IS1, transposase orfA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 87; Mature: 86
Protein sequence:
>87_residues MACINVHCPRCDSALVCRHGQNPKGQSRFRCRECRSVFQLTYTYQARKPGVKGQIVDMAFNGAGVWDMARTLKIGINTVI RTLKNSC
Sequences:
>Translated_87_residues MACINVHCPRCDSALVCRHGQNPKGQSRFRCRECRSVFQLTYTYQARKPGVKGQIVDMAFNGAGVWDMARTLKIGINTVI RTLKNSC >Mature_86_residues ACINVHCPRCDSALVCRHGQNPKGQSRFRCRECRSVFQLTYTYQARKPGVKGQIVDMAFNGAGVWDMARTLKIGINTVIR TLKNSC
Specific function: Absolutely required for transposition of IS1 [H]
COG id: COG3677
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IS1 elements insA family [H]
Homologues:
Organism=Escherichia coli, GI1789852, Length=87, Percent_Identity=42.5287356321839, Blast_Score=82, Evalue=6e-18, Organism=Escherichia coli, GI1788204, Length=87, Percent_Identity=42.5287356321839, Blast_Score=82, Evalue=6e-18, Organism=Escherichia coli, GI1786204, Length=87, Percent_Identity=42.5287356321839, Blast_Score=82, Evalue=6e-18, Organism=Escherichia coli, GI1790747, Length=87, Percent_Identity=44.8275862068966, Blast_Score=82, Evalue=9e-18, Organism=Escherichia coli, GI87081814, Length=87, Percent_Identity=42.5287356321839, Blast_Score=81, Evalue=1e-17, Organism=Escherichia coli, GI1786471, Length=87, Percent_Identity=42.5287356321839, Blast_Score=81, Evalue=1e-17, Organism=Escherichia coli, GI1786460, Length=87, Percent_Identity=42.5287356321839, Blast_Score=81, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003220 [H]
Pfam domain/function: PF03811 Ins_element1 [H]
EC number: NA
Molecular weight: Translated: 9778; Mature: 9646
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
8.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 11.5 %Cys+Met (Translated Protein) 8.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 10.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACINVHCPRCDSALVCRHGQNPKGQSRFRCRECRSVFQLTYTYQARKPGVKGQIVDMAF CCEECCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE NGAGVWDMARTLKIGINTVIRTLKNSC CCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ACINVHCPRCDSALVCRHGQNPKGQSRFRCRECRSVFQLTYTYQARKPGVKGQIVDMAF CEECCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE NGAGVWDMARTLKIGINTVIRTLKNSC CCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6265806 [H]