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The map label for this gene is amaB [H]

Identifier: 153950074

GI number: 153950074

Start: 3589188

End: 3590471

Strand: Reverse

Name: amaB [H]

Synonym: YpsIP31758_3185

Alternate gene names: 153950074

Gene position: 3590471-3589188 (Counterclockwise)

Preceding gene: 153949124

Following gene: 153949706

Centisome position: 76.02

GC content: 56.31

Gene sequence:

>1284_bases
ATGAGCGTAACCCTGCCGGATATCGAGGCTGAACAGGCTGCATTACGGGTTTTGGCCCGTAGTGACGTATTGGCGGCAAT
CAGTGAATCCCCCGAAGGGCTGACTCGGGTCTATCTATCTCCTGAACATTTACAGGCAAATCGGCAAGTCGGTGAATGGA
TGCAAGCGGTTGGTATGCAGGTTTGGCAGGATACCGTGGGGAATATTTGTGGTCGTTATGAAGGGCTACAACCGGATGCC
CCCGCCATCTTGTTAGGTTCTCATCTGGATACGGTGCGTAATGCGGGCCGCTATGATGGCATGTTGGGGGTATTAACTGC
GCTGGAGGTCGTGGGGTACTTACATCGTCATCAGCAACGGTTACCGGTCGCCATTGAAGTGATTGGTTTTGCTGATGAAG
AGGGAACGCGGTTTGGCATCACCCTGCTCGGCAGTAAAGGGGTGACAGGGCGTTGGCCTATGGAGTGGTTAAATACGACC
GATGCCGAGGGTATCAGTGTCGCGCAAGCGATGGTTCGTGCTGGCTTAGATCCGATGGACATCGGGCAATCTGCGCGTGC
AGCCAATGCCTTCTGCGCCTATCTTGAACTGCATATTGAGCAAGGGCCGTGTTTAGAAAAAGCGGGTCTGGCGCTGGGTG
TGGTGACGGATATTAACGGTGCGCGCCGTTTACATTGCCAGTTTACCGGGTTGGCGGGCCATGCGGGGACCGTACCGATG
GGGCAACGGCAAGATGCATTGGCCGGTGCCGCTGAATGGATGTGTGCCGTAGAGGCATTGACTGCGGCTCAGGGGGAGCA
TTTAGTGGCGACGGTAGGGACGTTGACGTGTCTGCCCGGTGCAGTGAATGTGATCCCCGGTCAAGTGAGGCTGACACTGG
ATATTCGCGGCCCAAATGACCGTGGGGTGAATGATTTATTGACCCGTCTATTGGCTGAGGCTGAAGCGATCGCCACGCGT
CGTGGCATAACGTTTACCGCCGAAGGGTTTTACCGTATCAAGGCAACGGCTTGTGATAGTGCTTTGCAGCAGTGCATCAG
CCAGAGTATCAGCCAGGTGCAGGGCCGTTGTTTAGCGCTGCCCAGTGGCGCGGGCCATGATGCGATAGCCATGGCGGAGT
GCTGGCCAGTCGGGATGCTATTTGTCCGCTGTAAAGGCGGCGTCAGCCATCATCCAGATGAGTCCGTCACGAGTAGTGAT
GTTGCGGTGGCGATTCAGGCGTATCTGGAGGCTGTTCTTACGTCTCCTTCGTCCCCTTCGTCCTTGACGCCGCAGCGGTG
TTAG

Upstream 100 bases:

>100_bases
TGGATAGTGCTCATCAGGTGGATAGTGCTCATCAGGTGGATAGTGCTCATCAGGCGGATAGTGCTCAAAGGAATAGTGCT
CAACTGAATGGGGTGAATTG

Downstream 100 bases:

>100_bases
CGGCTCTCACTCGCCTGAATCACTGACTGATGTCAGCTCATCAGGGCCCATGAGCCTCATCCCTGAGGCTCCCCCCAAAG
GTACCGGCGCGTAGGGGGCG

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MSVTLPDIEAEQAALRVLARSDVLAAISESPEGLTRVYLSPEHLQANRQVGEWMQAVGMQVWQDTVGNICGRYEGLQPDA
PAILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQRLPVAIEVIGFADEEGTRFGITLLGSKGVTGRWPMEWLNTT
DAEGISVAQAMVRAGLDPMDIGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLHCQFTGLAGHAGTVPM
GQRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPNDRGVNDLLTRLLAEAEAIATR
RGITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLALPSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSD
VAVAIQAYLEAVLTSPSSPSSLTPQRC

Sequences:

>Translated_427_residues
MSVTLPDIEAEQAALRVLARSDVLAAISESPEGLTRVYLSPEHLQANRQVGEWMQAVGMQVWQDTVGNICGRYEGLQPDA
PAILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQRLPVAIEVIGFADEEGTRFGITLLGSKGVTGRWPMEWLNTT
DAEGISVAQAMVRAGLDPMDIGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLHCQFTGLAGHAGTVPM
GQRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPNDRGVNDLLTRLLAEAEAIATR
RGITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLALPSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSD
VAVAIQAYLEAVLTSPSSPSSLTPQRC
>Mature_426_residues
SVTLPDIEAEQAALRVLARSDVLAAISESPEGLTRVYLSPEHLQANRQVGEWMQAVGMQVWQDTVGNICGRYEGLQPDAP
AILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQRLPVAIEVIGFADEEGTRFGITLLGSKGVTGRWPMEWLNTTD
AEGISVAQAMVRAGLDPMDIGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLHCQFTGLAGHAGTVPMG
QRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPNDRGVNDLLTRLLAEAEAIATRR
GITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLALPSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSDV
AVAIQAYLEAVLTSPSSPSSLTPQRC

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=377, Percent_Identity=33.1564986737401, Blast_Score=188, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 45252; Mature: 45121

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTLPDIEAEQAALRVLARSDVLAAISESPEGLTRVYLSPEHLQANRQVGEWMQAVGMQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
VWQDTVGNICGRYEGLQPDAPAILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQR
HHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
LPVAIEVIGFADEEGTRFGITLLGSKGVTGRWPMEWLNTTDAEGISVAQAMVRAGLDPMD
CCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCHHH
IGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLHCQFTGLAGHAGTVPM
CCCCHHHHHHHEEEEEEEECCCCCHHHCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCC
GQRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPND
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCEECCCEEEEEEEEECCCC
RGVNDLLTRLLAEAEAIATRRGITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLAL
CCHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCEEEEC
PSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSDVAVAIQAYLEAVLTSPSSPS
CCCCCCCCEEHHHHHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
SLTPQRC
CCCCCCC
>Mature Secondary Structure 
SVTLPDIEAEQAALRVLARSDVLAAISESPEGLTRVYLSPEHLQANRQVGEWMQAVGMQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
VWQDTVGNICGRYEGLQPDAPAILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQR
HHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
LPVAIEVIGFADEEGTRFGITLLGSKGVTGRWPMEWLNTTDAEGISVAQAMVRAGLDPMD
CCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCHHH
IGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLHCQFTGLAGHAGTVPM
CCCCHHHHHHHEEEEEEEECCCCCHHHCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCC
GQRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPND
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCEECCCEEEEEEEEECCCC
RGVNDLLTRLLAEAEAIATRRGITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLAL
CCHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCEEEEC
PSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSDVAVAIQAYLEAVLTSPSSPS
CCCCCCCCEEHHHHHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
SLTPQRC
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]