Click here to switch to the map view.

The map label for this gene is bedB [H]

Identifier: 153950070

GI number: 153950070

Start: 1021717

End: 1022037

Strand: Direct

Name: bedB [H]

Synonym: YpsIP31758_0844

Alternate gene names: 153950070

Gene position: 1021717-1022037 (Clockwise)

Preceding gene: 153949410

Following gene: 153947170

Centisome position: 21.63

GC content: 47.66

Gene sequence:

>321_bases
ATGGGCTGGTTCAGCGTCTGTAAGGTGAATGATATCAAACCAGATTTCCCGTTTTCGGCTCAAGCGGGTAATAACAGAGT
GGGTATTTATCTGGTGGAGGGCGAGTATTTTGCGATGGAAGATATTTGTCCTCATGCCTATGCATTACTAAGCCAAGGAA
TTAATGATGGTGAAATCATTGAATGCCCGCTACATGGTGCTCTGTTTAATGTGCGGACGGGGCAGTGTTTGCGTGAGCCG
GGCGATCGCGATTTAAACACCTATGCTGTGCGGATCAATGGCGATCAGATCGACGTTAATTTGGATGGCGATGGCGAGTA
G

Upstream 100 bases:

>100_bases
GCGCGACCCTCTCCTAAGGCGGTGGTGATTGCCCGAATATCGACCACACTTATGTTAGCGGTTTAGACTTTCGTCGTAAT
AATAATCTGGAGACATCTCA

Downstream 100 bases:

>100_bases
CAGGCATGGCTAATAGCTATTAGCTATCAAATATCAAACGTCAGCTACAGAACTCACGCCCCAACAGTGGGGAGTGAGGT
TATTGACAAAGTGCCCGCGA

Product: Rieske family iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MGWFSVCKVNDIKPDFPFSAQAGNNRVGIYLVEGEYFAMEDICPHAYALLSQGINDGEIIECPLHGALFNVRTGQCLREP
GDRDLNTYAVRINGDQIDVNLDGDGE

Sequences:

>Translated_106_residues
MGWFSVCKVNDIKPDFPFSAQAGNNRVGIYLVEGEYFAMEDICPHAYALLSQGINDGEIIECPLHGALFNVRTGQCLREP
GDRDLNTYAVRINGDQIDVNLDGDGE
>Mature_105_residues
GWFSVCKVNDIKPDFPFSAQAGNNRVGIYLVEGEYFAMEDICPHAYALLSQGINDGEIIECPLHGALFNVRTGQCLREPG
DRDLNTYAVRINGDQIDVNLDGDGE

Specific function: This protein seems to be a 2Fe-2S ferredoxin [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788890, Length=76, Percent_Identity=38.1578947368421, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: NA

Molecular weight: Translated: 11695; Mature: 11564

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWFSVCKVNDIKPDFPFSAQAGNNRVGIYLVEGEYFAMEDICPHAYALLSQGINDGEII
CCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCHHHHHHHHCCCCCCCEE
ECPLHGALFNVRTGQCLREPGDRDLNTYAVRINGDQIDVNLDGDGE
EECCCCEEEECCCCHHHCCCCCCCCEEEEEEECCCEEEEEECCCCC
>Mature Secondary Structure 
GWFSVCKVNDIKPDFPFSAQAGNNRVGIYLVEGEYFAMEDICPHAYALLSQGINDGEII
CCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCHHHHHHHHCCCCCCCEE
ECPLHGALFNVRTGQCLREPGDRDLNTYAVRINGDQIDVNLDGDGE
EECCCCEEEECCCCHHHCCCCCCCCEEEEEEECCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8344526 [H]