| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is livF [H]
Identifier: 153950048
GI number: 153950048
Start: 3208859
End: 3209569
Strand: Direct
Name: livF [H]
Synonym: YpsIP31758_2840
Alternate gene names: 153950048
Gene position: 3208859-3209569 (Clockwise)
Preceding gene: 153950035
Following gene: 153948471
Centisome position: 67.94
GC content: 49.79
Gene sequence:
>711_bases ATGCTAAGTTTAACCGCTGTAAATCAATACTATGGAAATAATCATATTCTCTGGGATATCAATCTGGAACTCCCTCGCGG CCAATGTACGTGCCTGATAGGCCGCAATGGTGTGGGGAAAACCACGTTGATTAATTGCATTATGGGGCATTTGCCCATTA AAAGCGGCACCATGATCTGGCAGCCCCACCATGAACCCCCGCAAAATTTGCAACTGCAGCCTGTTGAAAGACGCAATGCG TTAGGCATTGGTTATGTCCCACAAGGTCAGCAAATTTTCTCCCAACTGAGCGTCGAGGATAATCTACTGGTCGCCGTGCT GGCAGGCCGCCATAAGTCCCACCCGATTCCGGGCTGGGTTTTTGAGCTATTTCCATTACTGCACGATAAACGCAGCCAAC GAGGTGGTGAGCTGACCCGTAATCAACAACAACAGTTAGCCATTGCCAGAGCCTTGGTCGCAGAGCCAGAACTGCTTATC CTTGATGAGCCGGGCAGCGGTACCTCACCGGCGCTGAGTGAAGATATCAGCACGATTCTGCACCAACTGAGTCGTAATTT GGGTATGACCCTATTATTGGTCGAACACCGCTTGCCATTTATTCAGCATATTGCTGATCGCTTTTGCCTGATGGCGGGTG GCCGAAATGTCGCTCAGGGGACGTTAGATCAATTGAATGAAGGCTTGATTAGCGAGCATTTAGCCCGTTGA
Upstream 100 bases:
>100_bases ACTGCGACCAAGTATGCAGATTTGCTGGTTAACTCTCACTAGCCGTTACAGAACACCGGGGTACCTGTGAACTACTGGGA TCGACTAAGGAGACGCACTG
Downstream 100 bases:
>100_bases GCACTCTCAGGGCCGCGGCGCATTTGGGTAGATTAACTATACTCGGGTAGATTAACTACACTCGGGTAGATCAACTACAT AAGGTTAATCGCCCCTGATG
Product: amino acid ABC transporter ATP-binding protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 236; Mature: 236
Protein sequence:
>236_residues MLSLTAVNQYYGNNHILWDINLELPRGQCTCLIGRNGVGKTTLINCIMGHLPIKSGTMIWQPHHEPPQNLQLQPVERRNA LGIGYVPQGQQIFSQLSVEDNLLVAVLAGRHKSHPIPGWVFELFPLLHDKRSQRGGELTRNQQQQLAIARALVAEPELLI LDEPGSGTSPALSEDISTILHQLSRNLGMTLLLVEHRLPFIQHIADRFCLMAGGRNVAQGTLDQLNEGLISEHLAR
Sequences:
>Translated_236_residues MLSLTAVNQYYGNNHILWDINLELPRGQCTCLIGRNGVGKTTLINCIMGHLPIKSGTMIWQPHHEPPQNLQLQPVERRNA LGIGYVPQGQQIFSQLSVEDNLLVAVLAGRHKSHPIPGWVFELFPLLHDKRSQRGGELTRNQQQQLAIARALVAEPELLI LDEPGSGTSPALSEDISTILHQLSRNLGMTLLLVEHRLPFIQHIADRFCLMAGGRNVAQGTLDQLNEGLISEHLAR >Mature_236_residues MLSLTAVNQYYGNNHILWDINLELPRGQCTCLIGRNGVGKTTLINCIMGHLPIKSGTMIWQPHHEPPQNLQLQPVERRNA LGIGYVPQGQQIFSQLSVEDNLLVAVLAGRHKSHPIPGWVFELFPLLHDKRSQRGGELTRNQQQQLAIARALVAEPELLI LDEPGSGTSPALSEDISTILHQLSRNLGMTLLLVEHRLPFIQHIADRFCLMAGGRNVAQGTLDQLNEGLISEHLAR
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=208, Percent_Identity=28.8461538461538, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI116734710, Length=199, Percent_Identity=32.1608040201005, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI31657092, Length=225, Percent_Identity=28.4444444444444, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI9955968, Length=224, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI9955966, Length=224, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI45243524, Length=224, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI4505771, Length=229, Percent_Identity=28.82096069869, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI9961252, Length=229, Percent_Identity=28.82096069869, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI110832837, Length=215, Percent_Identity=26.046511627907, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI110832835, Length=215, Percent_Identity=26.046511627907, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI110832839, Length=217, Percent_Identity=26.2672811059908, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI150417984, Length=207, Percent_Identity=28.9855072463768, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI27881501, Length=209, Percent_Identity=24.8803827751196, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI30795238, Length=209, Percent_Identity=24.8803827751196, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI21536378, Length=223, Percent_Identity=26.457399103139, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961250, Length=236, Percent_Identity=27.9661016949153, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI21536376, Length=204, Percent_Identity=26.9607843137255, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI87082268, Length=237, Percent_Identity=36.2869198312236, Blast_Score=140, Evalue=7e-35, Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=32.0987654320988, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789864, Length=244, Percent_Identity=28.6885245901639, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=28.8888888888889, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1787792, Length=232, Percent_Identity=30.1724137931034, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1789672, Length=232, Percent_Identity=30.6034482758621, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786398, Length=232, Percent_Identity=27.5862068965517, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787089, Length=234, Percent_Identity=29.9145299145299, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1786253, Length=238, Percent_Identity=30.2521008403361, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790467, Length=225, Percent_Identity=31.5555555555556, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786872, Length=228, Percent_Identity=28.0701754385965, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790525, Length=252, Percent_Identity=26.984126984127, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788761, Length=225, Percent_Identity=28, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788165, Length=218, Percent_Identity=28.8990825688073, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788225, Length=225, Percent_Identity=29.7777777777778, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI48994943, Length=219, Percent_Identity=28.310502283105, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788450, Length=223, Percent_Identity=28.2511210762332, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1787370, Length=229, Percent_Identity=26.6375545851528, Blast_Score=80, Evalue=8e-17, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789586, Length=239, Percent_Identity=28.4518828451883, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI1787712, Length=214, Percent_Identity=27.5700934579439, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786654, Length=230, Percent_Identity=29.5652173913043, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48995001, Length=235, Percent_Identity=27.2340425531915, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787500, Length=220, Percent_Identity=26.3636363636364, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1788472, Length=224, Percent_Identity=24.1071428571429, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=27.1428571428571, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787758, Length=235, Percent_Identity=28.0851063829787, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87081791, Length=232, Percent_Identity=24.1379310344828, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082267, Length=223, Percent_Identity=29.1479820627803, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1789991, Length=239, Percent_Identity=28.0334728033473, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=27.2340425531915, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=26.6968325791855, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789962, Length=211, Percent_Identity=25.1184834123223, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789873, Length=209, Percent_Identity=27.7511961722488, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI87081782, Length=224, Percent_Identity=27.6785714285714, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786345, Length=232, Percent_Identity=28.8793103448276, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786703, Length=187, Percent_Identity=29.9465240641711, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787105, Length=205, Percent_Identity=28.780487804878, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790544, Length=252, Percent_Identity=22.6190476190476, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788644, Length=236, Percent_Identity=27.5423728813559, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=24.7863247863248, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788506, Length=217, Percent_Identity=26.7281105990783, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI25146777, Length=236, Percent_Identity=28.3898305084746, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71983516, Length=217, Percent_Identity=27.6497695852535, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71983510, Length=217, Percent_Identity=27.6497695852535, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71983523, Length=217, Percent_Identity=27.6497695852535, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193208177, Length=232, Percent_Identity=25.4310344827586, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115533608, Length=214, Percent_Identity=29.4392523364486, Blast_Score=70, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17565938, Length=233, Percent_Identity=27.8969957081545, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17510237, Length=212, Percent_Identity=27.3584905660377, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211017, Length=219, Percent_Identity=26.4840182648402, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193211015, Length=219, Percent_Identity=26.4840182648402, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71996809, Length=219, Percent_Identity=26.4840182648402, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17565586, Length=207, Percent_Identity=28.5024154589372, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17558664, Length=230, Percent_Identity=26.9565217391304, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=217, Percent_Identity=25.8064516129032, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI221500365, Length=246, Percent_Identity=25.609756097561, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI116007184, Length=246, Percent_Identity=25.609756097561, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI85725262, Length=215, Percent_Identity=30.2325581395349, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI221512771, Length=223, Percent_Identity=27.8026905829596, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24643674, Length=222, Percent_Identity=25.6756756756757, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI17136662, Length=221, Percent_Identity=31.6742081447964, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24650855, Length=211, Percent_Identity=26.0663507109005, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24650853, Length=211, Percent_Identity=26.0663507109005, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24659289, Length=231, Percent_Identity=29.4372294372294, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI281362751, Length=209, Percent_Identity=26.3157894736842, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24582014, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24582012, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI23397593, Length=233, Percent_Identity=30.4721030042918, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24666092, Length=225, Percent_Identity=24.4444444444444, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24585557, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI45552437, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648314, Length=228, Percent_Identity=24.5614035087719, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24653245, Length=224, Percent_Identity=28.125, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI281363262, Length=224, Percent_Identity=28.125, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 26220; Mature: 26220
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSLTAVNQYYGNNHILWDINLELPRGQCTCLIGRNGVGKTTLINCIMGHLPIKSGTMIW CCEEEEEHHHHCCCEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE QPHHEPPQNLQLQPVERRNALGIGYVPQGQQIFSQLSVEDNLLVAVLAGRHKSHPIPGWV CCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHH FELFPLLHDKRSQRGGELTRNQQQQLAIARALVAEPELLILDEPGSGTSPALSEDISTIL HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH HQLSRNLGMTLLLVEHRLPFIQHIADRFCLMAGGRNVAQGTLDQLNEGLISEHLAR HHHHHCCCEEEEEHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLSLTAVNQYYGNNHILWDINLELPRGQCTCLIGRNGVGKTTLINCIMGHLPIKSGTMIW CCEEEEEHHHHCCCEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE QPHHEPPQNLQLQPVERRNALGIGYVPQGQQIFSQLSVEDNLLVAVLAGRHKSHPIPGWV CCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHH FELFPLLHDKRSQRGGELTRNQQQQLAIARALVAEPELLILDEPGSGTSPALSEDISTIL HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH HQLSRNLGMTLLLVEHRLPFIQHIADRFCLMAGGRNVAQGTLDQLNEGLISEHLAR HHHHHCCCEEEEEHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]