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The map label for this gene is ydbJ [H]

Identifier: 153950043

GI number: 153950043

Start: 2087224

End: 2087634

Strand: Direct

Name: ydbJ [H]

Synonym: YpsIP31758_1806

Alternate gene names: 153950043

Gene position: 2087224-2087634 (Clockwise)

Preceding gene: 153948379

Following gene: 153947873

Centisome position: 44.19

GC content: 44.53

Gene sequence:

>411_bases
ATGTACTACATAATACTAGCTAGGTTTATAAATTATAGTTTGATAAGTCTATCCTGCCGGAGCAAAAGAATGAGAATATT
TCAGGGAGTAGTGTGCGGTATGGCGCTATTTTTAGCCGCATGTAGCAGCAATGATTCAAATATCAATACGTTAAATAATA
GCAATACGTTAAATAATAGCGAGACCTACGAACCCGAGCAGCAGGCTACCAACGCTATCGCTTATCGCAATGTGAATATG
TCAAATGACGTCAATATGTCCAATTCGGCGGCAGCTAATTGTGCTAATGCGGGGGGAATATTGGCTAACACGAGGCAACT
TCATGGCGGTAGCGTAGGCATGTGCCAGTTACCGGATGGCAAACGTTGTGACGAGGAAGCGTTGTTGCGCGGTGCATGCC
CGGTGCGTTAA

Upstream 100 bases:

>100_bases
ATGAGTTGTGTATTATACTGGGAATATCTTTATCATGTCGTGCTTCATCTATTCCCAATAGCGTGATGTACTAATATAGC
GTGATGTACTAAATAGGGTG

Downstream 100 bases:

>100_bases
TTGGCAGCAGCTATCGGAAAACTGCCGCCTAAATAAGAGGTTATGCATCAATGAGCATCAGTTAACCCAATCTTTCTGTT
GGTAAACTAAGGTGTGCGTA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MYYIILARFINYSLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVNM
SNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR

Sequences:

>Translated_136_residues
MYYIILARFINYSLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVNM
SNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR
>Mature_136_residues
MYYIILARFINYSLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVNM
SNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081894, Length=110, Percent_Identity=41.8181818181818, Blast_Score=66, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005590 [H]

Pfam domain/function: PF03891 DUF333 [H]

EC number: NA

Molecular weight: Translated: 14751; Mature: 14751

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYIILARFINYSLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNS
CEEEEEEHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC
ETYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDG
CCCCCHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCCCEEEEECCCC
KRCDEEALLRGACPVR
CCCCHHHHHCCCCCCC
>Mature Secondary Structure
MYYIILARFINYSLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNS
CEEEEEEHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC
ETYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDG
CCCCCHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCCCEEEEECCCC
KRCDEEALLRGACPVR
CCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]