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The map label for this gene is ompA [H]

Identifier: 153949967

GI number: 153949967

Start: 1608052

End: 1609428

Strand: Direct

Name: ompA [H]

Synonym: YpsIP31758_1372

Alternate gene names: 153949967

Gene position: 1608052-1609428 (Clockwise)

Preceding gene: 153949757

Following gene: 153948377

Centisome position: 34.05

GC content: 48.15

Gene sequence:

>1377_bases
ATGAGTGACAGCAGTGATTTGAACCTTGGGGGCTCAATGCCTCCTTTTGATCAAAGCAGAAATGTGGATGAGAGTCCGCA
GGCATTAGGCCGGTTCTTGCTTGATGAACCAATAACATACCCAGATAGCACTCAGGATAATGCGGCCTTCACTAGAGAGG
CCCCTCATTCTGGTGCGGCACAGCAATATGACACGACCCTCTTACGGGGTGAAAGTGTGCAACAGCGTGTCGCTAAAGTA
CTCGCATCTTCAACGCCATTATTGGAAGCGGCACAGCCACTATTACGTGCCTTGAGCGAGATGCCCGCGCATATTGGGGA
TGTTTCACAGGTTCATATATTAAAACAAAGCCTTAAAAATGAGATCACCCTCTTTAGTGTGGTGTGTGATGAAGCGGATA
TCTCATGGAAAAAAATGGCTATCGTCCGCTATTGCCTGTGTACTGCGTTGGATGAAGCCGCTCACACGATGTCGTGGGGA
ATGATGGCAGGTTGGTCACAAAGCAACCTGTTGAACCATTTTGAAGGCGATAATGACGGCGGGAATAAGTTTTTCTTATT
GGTCGGCCGTCTCTCTATGAGCCCGCATGAATATGCGGATGGTTTAGAGGTTTTGCTGCGCATTTTAGGGCTCGGTTTTG
AGGGGCGCTACAGCATTATCGAAGATGGTGATCGGCAATTAACTAAAATACGCCAAGGGTTGCTGACGCTGCTCCAAAGT
ACCCGAGACACGATCCCACCGGCACTTTCTCCGCATGGGTTGATCGCACATCAAAACAGAAGACGGCGGGGCATTTTTGT
TCCGGTGCGCGTATCCATGCTGTTGTGTGGTTTCCTCATTGTCGCGACCTTTATTGGATGTAAATACTTTCTCTCGGTAC
CGGAAAGTGACTTGCTAAAAAGAATGGCAGCATTGCAACGTGTGGTTGTGACGCCACCCGTTGCCGCACCAAAACTTCGA
CTGTCTATTTTATTAAAAGATGAGATAGCGAAGCAGTTAGTCAGTGTTGATGAAACGAGCAACAACAGCAAAGTCATCTT
TAAAGGCGACTCTATGTTTATGGTCGGCTCGGATAACGTCAGACCTGAAATGATTGACGTAATTAAACGCGTCGCGCAGG
AAGTGCATCGCGTTAAAGGGGCAATCCTCATTGTCGGGCATACAGACTCTATGCCGATTAATAAACCCGGCTTCCCTAAT
AACCAGGTACTTTCCGAAAAACGCGCGGCCAATGTTGCACGCTATATGGAACAGGCCGGTATTCCAACCGACAAAATTCG
GTTTGAGGGCAAGGGGGAAACGCAACCGGTTAGCAGCAATGACGATGCGACAGGACGTTCGCAAAACCGCCGCGTAGAAA
TTTTTGTTAATTATTGA

Upstream 100 bases:

>100_bases
GCCCCTTCTGGGACAAGGTTTCCAATGCTGGTGCCATCGCCTTGCACGTGGCGGGTGATTTCCCTGCCTTGAAAATGGAG
CTCTGGGGGATTAGAGATTC

Downstream 100 bases:

>100_bases
GATAACGAATGTCTTATTTGAATCGATTGTTTTCTGGCTGGGCCATGAAACGCATATTGCTGGTCGGCTGCTTTATATTG
CTGGCTGCGGCGATATGGTT

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSDSSDLNLGGSMPPFDQSRNVDESPQALGRFLLDEPITYPDSTQDNAAFTREAPHSGAAQQYDTTLLRGESVQQRVAKV
LASSTPLLEAAQPLLRALSEMPAHIGDVSQVHILKQSLKNEITLFSVVCDEADISWKKMAIVRYCLCTALDEAAHTMSWG
MMAGWSQSNLLNHFEGDNDGGNKFFLLVGRLSMSPHEYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQS
TRDTIPPALSPHGLIAHQNRRRRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLKRMAALQRVVVTPPVAAPKLR
LSILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGSDNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPN
NQVLSEKRAANVARYMEQAGIPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY

Sequences:

>Translated_458_residues
MSDSSDLNLGGSMPPFDQSRNVDESPQALGRFLLDEPITYPDSTQDNAAFTREAPHSGAAQQYDTTLLRGESVQQRVAKV
LASSTPLLEAAQPLLRALSEMPAHIGDVSQVHILKQSLKNEITLFSVVCDEADISWKKMAIVRYCLCTALDEAAHTMSWG
MMAGWSQSNLLNHFEGDNDGGNKFFLLVGRLSMSPHEYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQS
TRDTIPPALSPHGLIAHQNRRRRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLKRMAALQRVVVTPPVAAPKLR
LSILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGSDNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPN
NQVLSEKRAANVARYMEQAGIPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY
>Mature_457_residues
SDSSDLNLGGSMPPFDQSRNVDESPQALGRFLLDEPITYPDSTQDNAAFTREAPHSGAAQQYDTTLLRGESVQQRVAKVL
ASSTPLLEAAQPLLRALSEMPAHIGDVSQVHILKQSLKNEITLFSVVCDEADISWKKMAIVRYCLCTALDEAAHTMSWGM
MAGWSQSNLLNHFEGDNDGGNKFFLLVGRLSMSPHEYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQST
RDTIPPALSPHGLIAHQNRRRRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLKRMAALQRVVVTPPVAAPKLRL
SILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGSDNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNN
QVLSEKRAANVARYMEQAGIPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=131, Percent_Identity=32.0610687022901, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 50601; Mature: 50470

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSSDLNLGGSMPPFDQSRNVDESPQALGRFLLDEPITYPDSTQDNAAFTREAPHSGAA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH
QQYDTTLLRGESVQQRVAKVLASSTPLLEAAQPLLRALSEMPAHIGDVSQVHILKQSLKN
HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHC
EITLFSVVCDEADISWKKMAIVRYCLCTALDEAAHTMSWGMMAGWSQSNLLNHFEGDNDG
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
GNKFFLLVGRLSMSPHEYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQS
CCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHH
TRDTIPPALSPHGLIAHQNRRRRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLK
HHHCCCCCCCCCCEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMAALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGSDNV
HHHHHHHHHCCCCCCCCCHHEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCC
RPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAG
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
IPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY
CCHHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
SDSSDLNLGGSMPPFDQSRNVDESPQALGRFLLDEPITYPDSTQDNAAFTREAPHSGAA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH
QQYDTTLLRGESVQQRVAKVLASSTPLLEAAQPLLRALSEMPAHIGDVSQVHILKQSLKN
HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHC
EITLFSVVCDEADISWKKMAIVRYCLCTALDEAAHTMSWGMMAGWSQSNLLNHFEGDNDG
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
GNKFFLLVGRLSMSPHEYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQS
CCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHH
TRDTIPPALSPHGLIAHQNRRRRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLK
HHHCCCCCCCCCCEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMAALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGSDNV
HHHHHHHHHCCCCCCCCCHHEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCC
RPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAG
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
IPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY
CCHHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]