Click here to switch to the map view.

The map label for this gene is rimM [H]

Identifier: 153949535

GI number: 153949535

Start: 3634216

End: 3634764

Strand: Reverse

Name: rimM [H]

Synonym: YpsIP31758_3227

Alternate gene names: 153949535

Gene position: 3634764-3634216 (Counterclockwise)

Preceding gene: 153949898

Following gene: 153949105

Centisome position: 76.95

GC content: 46.81

Gene sequence:

>549_bases
ATGAGCAAGCAACTCAATCCTGCAGTTCCCGACCAGCCGATTGTTCTCGGTAAAATGGGTTCTACATACGGCATTCGCGG
TTGGCTCAGAGTATTTTCATCCACCGAGAACGCCGAAAGCATTTTTGACTATCAGCCGTGGTTTATCCAGCAGGCGGGTA
AGTGGCAGCATGTCGAGTTGGAAGACTGGAAGCGCCACAGTCAGGATCTGATCATCAAAGTGAAAGGTGTTGATGATCGG
GATGCCGCGAATTTACTGACTAATTGCGAAATTTTCGTAGATTCCACACAACTCCCTGCATTGGAAGAGGATGATTACTA
CTGGAAAGACCTTATGGGTTGCCAAGTAGTAACCACCACGGGTTATGAACTGGGTAAAATCATCGATATGATGGAAACCG
GTTCTAACGATGTCATGGTCGTGAAGGCAAATCTGAAAGATGCATTCGGTATGAAGGAGCGGTTGGTCCCGTTTCTTCAT
GGGCAGGTTATCAAGAAAGTCGATCTCACTGCTCAACGTGTTGAAGTAGATTGGGATCCTGGTTTTTGA

Upstream 100 bases:

>100_bases
CGAACATTGGATCGGCCTGGGTGCTACCGTTTCTGATCGCGTATCTGTGCTGATCAAAGACGCTAAGAAAGCAGCTTAAT
CTGTCACGGTGGTGGTTATT

Downstream 100 bases:

>100_bases
CCTCCGAATTAAACGGCGATAGCGAGTGGAACAAAACAATGTGGATCGGTGTTATTAGCCTGTTTCCTGAGATGTTCCGC
GCAATAACCGATTACGGGGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSKQLNPAVPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDLIIKVKGVDDR
DAANLLTNCEIFVDSTQLPALEEDDYYWKDLMGCQVVTTTGYELGKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLH
GQVIKKVDLTAQRVEVDWDPGF

Sequences:

>Translated_182_residues
MSKQLNPAVPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDLIIKVKGVDDR
DAANLLTNCEIFVDSTQLPALEEDDYYWKDLMGCQVVTTTGYELGKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLH
GQVIKKVDLTAQRVEVDWDPGF
>Mature_181_residues
SKQLNPAVPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDLIIKVKGVDDRD
AANLLTNCEIFVDSTQLPALEEDDYYWKDLMGCQVVTTTGYELGKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHG
QVIKKVDLTAQRVEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=81.8681318681319, Blast_Score=320, Evalue=5e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20774; Mature: 20643

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQLNPAVPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVEL
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCHHHHCCCCCEECCCCCEEEECH
EDWKRHSQDLIIKVKGVDDRDAANLLTNCEIFVDSTQLPALEEDDYYWKDLMGCQVVTTT
HHHHCCCCEEEEEEECCCCCHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCEEEEEC
GYELGKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDWDP
CCHHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
GF
CC
>Mature Secondary Structure 
SKQLNPAVPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVEL
CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCHHHHCCCCCEECCCCCEEEECH
EDWKRHSQDLIIKVKGVDDRDAANLLTNCEIFVDSTQLPALEEDDYYWKDLMGCQVVTTT
HHHHCCCCEEEEEEECCCCCHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCEEEEEC
GYELGKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDWDP
CCHHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
GF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA