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The map label for this gene is slyA [H]

Identifier: 153949443

GI number: 153949443

Start: 2044768

End: 2045199

Strand: Direct

Name: slyA [H]

Synonym: YpsIP31758_1767

Alternate gene names: 153949443

Gene position: 2044768-2045199 (Clockwise)

Preceding gene: 153948713

Following gene: 153950106

Centisome position: 43.29

GC content: 40.28

Gene sequence:

>432_bases
TTGGAATCGACATTAGGATCTGATCTAGCACGATTAGTTCGCGTTTGGCGCGCATTAATTGACCATCGGCTGAAACCGTT
GGAACTGACTCAAACACATTGGGTTACTTTGTATAACATTAATCGTTTACCACCAGAGCAATCACAGATTCAACTGGCGA
AAGCGATTGGTATTGAACAACCATCATTGGTTAGAACCTTGGATCAACTGGAGGAAAAAGGTTTAATCACACGGCATACT
TGTGCAAATGATCGTCGTGCGAAGAGAATTAAATTAACGGAACAGTCTTCACCGATAATCGAACAGGTTGATGGCGTGAT
TTGTTCTACCCGCAAAGAAATACTTGGGGGGATTTCATCGGATGAAATTGCAGTGTTATCAGGCCTAATCGATAAGCTTG
AGAAAAATATTATTCAATTACAAACTAAGTAA

Upstream 100 bases:

>100_bases
GCATCGACGGTATATATACATTTGTGTTTTTAATGTTAATTACCCAAAATAGACTGGACTCTGGGAGTTATGCTAGCACG
CTAATTAAAAGGAGGAGCAA

Downstream 100 bases:

>100_bases
TAATTTAAAGTTCAAAGACTTTATTCACAGCAGAACAAAACAAGCCCCACAGTACAAAAAATAAATATCCTCCGGCATAG
CCGGAGGTTTTTCATATGCG

Product: SlyA family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MESTLGSDLARLVRVWRALIDHRLKPLELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT
CANDRRAKRIKLTEQSSPIIEQVDGVICSTRKEILGGISSDEIAVLSGLIDKLEKNIIQLQTK

Sequences:

>Translated_143_residues
MESTLGSDLARLVRVWRALIDHRLKPLELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT
CANDRRAKRIKLTEQSSPIIEQVDGVICSTRKEILGGISSDEIAVLSGLIDKLEKNIIQLQTK
>Mature_143_residues
MESTLGSDLARLVRVWRALIDHRLKPLELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT
CANDRRAKRIKLTEQSSPIIEQVDGVICSTRKEILGGISSDEIAVLSGLIDKLEKNIIQLQTK

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=143, Percent_Identity=76.9230769230769, Blast_Score=222, Evalue=8e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16170; Mature: 16170

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESTLGSDLARLVRVWRALIDHRLKPLELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCHHHHHHHHHHHCCCC
PSLVRTLDQLEEKGLITRHTCANDRRAKRIKLTEQSSPIIEQVDGVICSTRKEILGGISS
CHHHHHHHHHHHCCCEEECCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
DEIAVLSGLIDKLEKNIIQLQTK
CHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MESTLGSDLARLVRVWRALIDHRLKPLELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCHHHHHHHHHHHCCCC
PSLVRTLDQLEEKGLITRHTCANDRRAKRIKLTEQSSPIIEQVDGVICSTRKEILGGISS
CHHHHHHHHHHHCCCEEECCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
DEIAVLSGLIDKLEKNIIQLQTK
CHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA