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The map label for this gene is smpA [H]

Identifier: 153949351

GI number: 153949351

Start: 3262089

End: 3262430

Strand: Direct

Name: smpA [H]

Synonym: YpsIP31758_2890

Alternate gene names: 153949351

Gene position: 3262089-3262430 (Clockwise)

Preceding gene: 153950325

Following gene: 153948403

Centisome position: 69.06

GC content: 45.61

Gene sequence:

>342_bases
ATGCGCTGTAAAATGCTGACTGCCGCCGCTGTGATGCTTGCAATGCTTACTGCGGGTTGTTCAACGTTGGAGAAGGTGGT
CTACCGGCCTGATATTAATCAGGGTAACTATTTATCACCTATTGATGCCTCCAAAATTCATAAAGGTATGACACAGCAAC
AAGTGGCGTATACCTTAGGCACGCCGATGCTACAAGATCCGTTTGGCACTCAAACCTGGTTCTACGTTTTCCGCCAACAA
CCTGGTCACGAAAAAATAACGCAACAAACGTTAACGTTGACCTTTGATAGCAATGGTGTACTGACTGATATCAAAAATGA
GCCCGCGTTAACCGGAAGCTAA

Upstream 100 bases:

>100_bases
TTTTCCTTTTTGGTGGTCATACAGGTGCCCTGTAAAGGTTTCCAACTGCCGCAAGGTCTATTATCATCGTCATCCTATGC
CCTAAAGGAATGTGATTACT

Downstream 100 bases:

>100_bases
GTTATTTGAGAATTGCAGAACAGATTGGGAATGCGGGTTATGGTGTTAGGTTCTAAACCTATTGATGTTAACTCAGCCAC
AAGATAGTCCGCGTTTCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MRCKMLTAAAVMLAMLTAGCSTLEKVVYRPDINQGNYLSPIDASKIHKGMTQQQVAYTLGTPMLQDPFGTQTWFYVFRQQ
PGHEKITQQTLTLTFDSNGVLTDIKNEPALTGS

Sequences:

>Translated_113_residues
MRCKMLTAAAVMLAMLTAGCSTLEKVVYRPDINQGNYLSPIDASKIHKGMTQQQVAYTLGTPMLQDPFGTQTWFYVFRQQ
PGHEKITQQTLTLTFDSNGVLTDIKNEPALTGS
>Mature_113_residues
MRCKMLTAAAVMLAMLTAGCSTLEKVVYRPDINQGNYLSPIDASKIHKGMTQQQVAYTLGTPMLQDPFGTQTWFYVFRQQ
PGHEKITQQTLTLTFDSNGVLTDIKNEPALTGS

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=113, Percent_Identity=77.8761061946903, Blast_Score=192, Evalue=6e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 12516; Mature: 12516

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCKMLTAAAVMLAMLTAGCSTLEKVVYRPDINQGNYLSPIDASKIHKGMTQQQVAYTLG
CCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCCHHHHHCCCCHHHHHHHHC
TPMLQDPFGTQTWFYVFRQQPGHEKITQQTLTLTFDSNGVLTDIKNEPALTGS
CCCCCCCCCCCEEEEEEECCCCCHHHCCEEEEEEECCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MRCKMLTAAAVMLAMLTAGCSTLEKVVYRPDINQGNYLSPIDASKIHKGMTQQQVAYTLG
CCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCCHHHHHCCCCHHHHHHHHC
TPMLQDPFGTQTWFYVFRQQPGHEKITQQTLTLTFDSNGVLTDIKNEPALTGS
CCCCCCCCCCCEEEEEEECCCCCHHHCCEEEEEEECCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]