| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is htrE [H]
Identifier: 153949244
GI number: 153949244
Start: 1599821
End: 1602322
Strand: Direct
Name: htrE [H]
Synonym: YpsIP31758_1365
Alternate gene names: 153949244
Gene position: 1599821-1602322 (Clockwise)
Preceding gene: 153949430
Following gene: 153948656
Centisome position: 33.87
GC content: 46.24
Gene sequence:
>2502_bases GTGATACCCGTTGAGTTTAACGCCGACTTTATTCACGGTGGTGGGGTCGATGTCATGCGATTTATGCATGAAAACCCTGT TGCACCAGGAGTATACGATGTCACCGTCATCATTAATGGCAAAAATCGCGGTAAACACCGTATCCGCTTTGAATTAAGCG AAGGGGAATCTACCGCAGAACCTTGTTTTACCTTGGAACAGCTTGATTCTATTGGCCTGAAAATTGAAACAAGCGATACA GATTTATTAGTAAACGGAAAAGCAGCACCCAAAGATCAGTGTTACAACTTAAGGGCATTGATTAAAGACAGCCATGTTAA CTATAACTCCGGTGATCTTGAACTTTCACTCACCGTACCGCAGTTTAATTTGGTGCATCATCCGCGTGGGTATATTGATT CCAGTTTGTGGGATGCGGGTGGGACAGTTGGTTTTCTGGATTACAACAGTAATGTTTATAGCATCTTTAATGGCCGCTCT AACAGCGATGTAGGTTCAGATAACTCAAATAGCTACAACAGTAATATTGGGCTATCAGCCGGTATTAATCTTGGTGAGTG GCGGTTCAGGAAGCGTCTTAATACTACCTGGTCGAATAGCAGTGGTATGCACACTCAGAATCTGTATGGGTATGCCGCGA CAGATATTACCGCGTTAAAAAGTCAATTAACGATTGGGGATACCAATACCCAAGGGAGTTTATTCGATAGTTATGCATTA CGTGGTGTGCTATTGGCATCAGATACTCGGATGTTGCCGGAGGGAATACGTAATTACTCTCCTATCGTCAGAGGGATAGC TGAGACAAATGCCAGAGTGACGGTGACGCAGCGCGGGCAAATTATTTATGAAACGGTGGTCACACCGGGAGCCTTTGAAC TGACCGATATCGGCACGATGTCGTACGGCGGTGATTTACAAATGACGATCACGGAGTCTGATGGCCGAACGCGTATCCAA AGGATCCCGTTTTCAGCTCCCCCGATGTTGCTTTACCAAGGGGTGTCCCGGTTCGATTTTTCGGCAGGTCAACTGAATGA CAGTTCGATAAACCATAATCCGGCGATTGTCCAAGGGGCATACCATTATGGTTTGGGAAATACGTATACCCTCTATGGTG GGGCACAGGTTGCTGAGAATTATCGTTCGGTTGCGATAGGTAACGCGTTCAATACCCCGTTGGGAGGGGTATCGATGGAT ATCACACATGCTAAAAGTGAATTAGCGGGTGATCGTCGCTCCAGCGGTAATAGCTATAAAATTGATTACTCCAAATACGT AGGAGAAACCGATACCAACCTGACATTGGCCGCCTATAGATACTCTTCCGGTGGGTATTACAGTTTTAGGGAAGCCAGTC TGGATCGTTATGGGAACAGTAATGGGATTGATGAAATTGACTTTCGTACCCGTAATCGGTTGTCACTCAGTGTCTCCCAA CGCGTAGCGGATAATATGTCAGTTAACCTGAACAGCAGCCTTTATAGCTACTGGGGCAATCAGGATGCATCACAACAATA TTCGGTGGGTTTTAACCATTCACTGCGCTCTTTCTCTTATACGGTGAGTGCGATACGCACCAGTAATAGCGGTAATAGCA GTAATGGCGACAATGATCGGGAATATGAAAATAGTTATATGCTCGCGGTCAGCATACCTATTGGCGGGAGTGGGAAGAAT AAACCGCTGTTTAGTTCGCTCTCGACCATGGTTAGCCATAGTGAAGCCGGTGATACACAGTTACAGCTGACTACGAGTGG TAGCCGGGGTGATCAGAACGAGTTGACCTATGGAATAGGTACGTCATATGGCAATCGTAATGATGCGTCTTCTGAGCAAT CTGTGATAGGGAATATGGGTTATCAGTCCTCGGTGGGCCAACTGGGTATGACAGCGTCAGCCAATAATAATGCATCACGG CAGCTTTCTGTTTCGGCAAGCGGCAGCCTGGTGGCTCATCAGGGCGGCGTGATAGCGGGCCCACGACTTGGCGATGCGCC TTTTGCCATCATCAATGCTCAGGGTGCCGGAGGGGCTAAAGTGTTTAATGGCCGCGGTGCAAAGATTGATAGTAATGGAT ATGCGCTGGTGCCATCACTGACACCGTATCGGGAAAATACCATTGCGATTGATTATAAAGACTTGCCTGAGACAGTCGAT ATTCTGGAGAACCATAAAGTGGTGGTACCCAGAATGGGCGCGATGATCCCAGTCAAGATGAAAACTATGACAGGTAATCC GATGATGCTTATTGTCAGGGATGAAAATAAAGAGTTTCTTCCTATCGGCACTGATTTATTGGATGCGGATGGGGTGAGTC AAAGTATTGTTGGGCAAGGTGGAATGGCATTTATTCGTGGATGGGATCCTGTATCGCAACCAATTACAGCAACCTTAAAT GGCGGCATAGATAAATGTGTCATTAAACCTGATGCGAAAATCGATACTGCTACAAAGACAGTGCAAATAATACAGTTGGA GGTGATATGTCTTCGTCGCTAA
Upstream 100 bases:
>100_bases TTCATTGAGCGTTGCGGTTATTTTTATAGGCTCTGTTTTACTCGTAACTAAGAGTATCTCTGCCGTACCAATGTCTCAGG ATACAAATGAGAGCGCAGCA
Downstream 100 bases:
>100_bases AAAATAAGGTTGCACAAAAACCTATCGCGTTACTTCTTTTGCTGACTGCGGTTTTTATTGCTCAGTCACAACCCGCACAG GCCGCCAGTTCGTGTGCGGG
Product: fimbrial usher protein
Products: NA
Alternate protein names: Heat shock protein E [H]
Number of amino acids: Translated: 833; Mature: 833
Protein sequence:
>833_residues MIPVEFNADFIHGGGVDVMRFMHENPVAPGVYDVTVIINGKNRGKHRIRFELSEGESTAEPCFTLEQLDSIGLKIETSDT DLLVNGKAAPKDQCYNLRALIKDSHVNYNSGDLELSLTVPQFNLVHHPRGYIDSSLWDAGGTVGFLDYNSNVYSIFNGRS NSDVGSDNSNSYNSNIGLSAGINLGEWRFRKRLNTTWSNSSGMHTQNLYGYAATDITALKSQLTIGDTNTQGSLFDSYAL RGVLLASDTRMLPEGIRNYSPIVRGIAETNARVTVTQRGQIIYETVVTPGAFELTDIGTMSYGGDLQMTITESDGRTRIQ RIPFSAPPMLLYQGVSRFDFSAGQLNDSSINHNPAIVQGAYHYGLGNTYTLYGGAQVAENYRSVAIGNAFNTPLGGVSMD ITHAKSELAGDRRSSGNSYKIDYSKYVGETDTNLTLAAYRYSSGGYYSFREASLDRYGNSNGIDEIDFRTRNRLSLSVSQ RVADNMSVNLNSSLYSYWGNQDASQQYSVGFNHSLRSFSYTVSAIRTSNSGNSSNGDNDREYENSYMLAVSIPIGGSGKN KPLFSSLSTMVSHSEAGDTQLQLTTSGSRGDQNELTYGIGTSYGNRNDASSEQSVIGNMGYQSSVGQLGMTASANNNASR QLSVSASGSLVAHQGGVIAGPRLGDAPFAIINAQGAGGAKVFNGRGAKIDSNGYALVPSLTPYRENTIAIDYKDLPETVD ILENHKVVVPRMGAMIPVKMKTMTGNPMMLIVRDENKEFLPIGTDLLDADGVSQSIVGQGGMAFIRGWDPVSQPITATLN GGIDKCVIKPDAKIDTATKTVQIIQLEVICLRR
Sequences:
>Translated_833_residues MIPVEFNADFIHGGGVDVMRFMHENPVAPGVYDVTVIINGKNRGKHRIRFELSEGESTAEPCFTLEQLDSIGLKIETSDT DLLVNGKAAPKDQCYNLRALIKDSHVNYNSGDLELSLTVPQFNLVHHPRGYIDSSLWDAGGTVGFLDYNSNVYSIFNGRS NSDVGSDNSNSYNSNIGLSAGINLGEWRFRKRLNTTWSNSSGMHTQNLYGYAATDITALKSQLTIGDTNTQGSLFDSYAL RGVLLASDTRMLPEGIRNYSPIVRGIAETNARVTVTQRGQIIYETVVTPGAFELTDIGTMSYGGDLQMTITESDGRTRIQ RIPFSAPPMLLYQGVSRFDFSAGQLNDSSINHNPAIVQGAYHYGLGNTYTLYGGAQVAENYRSVAIGNAFNTPLGGVSMD ITHAKSELAGDRRSSGNSYKIDYSKYVGETDTNLTLAAYRYSSGGYYSFREASLDRYGNSNGIDEIDFRTRNRLSLSVSQ RVADNMSVNLNSSLYSYWGNQDASQQYSVGFNHSLRSFSYTVSAIRTSNSGNSSNGDNDREYENSYMLAVSIPIGGSGKN KPLFSSLSTMVSHSEAGDTQLQLTTSGSRGDQNELTYGIGTSYGNRNDASSEQSVIGNMGYQSSVGQLGMTASANNNASR QLSVSASGSLVAHQGGVIAGPRLGDAPFAIINAQGAGGAKVFNGRGAKIDSNGYALVPSLTPYRENTIAIDYKDLPETVD ILENHKVVVPRMGAMIPVKMKTMTGNPMMLIVRDENKEFLPIGTDLLDADGVSQSIVGQGGMAFIRGWDPVSQPITATLN GGIDKCVIKPDAKIDTATKTVQIIQLEVICLRR >Mature_833_residues MIPVEFNADFIHGGGVDVMRFMHENPVAPGVYDVTVIINGKNRGKHRIRFELSEGESTAEPCFTLEQLDSIGLKIETSDT DLLVNGKAAPKDQCYNLRALIKDSHVNYNSGDLELSLTVPQFNLVHHPRGYIDSSLWDAGGTVGFLDYNSNVYSIFNGRS NSDVGSDNSNSYNSNIGLSAGINLGEWRFRKRLNTTWSNSSGMHTQNLYGYAATDITALKSQLTIGDTNTQGSLFDSYAL RGVLLASDTRMLPEGIRNYSPIVRGIAETNARVTVTQRGQIIYETVVTPGAFELTDIGTMSYGGDLQMTITESDGRTRIQ RIPFSAPPMLLYQGVSRFDFSAGQLNDSSINHNPAIVQGAYHYGLGNTYTLYGGAQVAENYRSVAIGNAFNTPLGGVSMD ITHAKSELAGDRRSSGNSYKIDYSKYVGETDTNLTLAAYRYSSGGYYSFREASLDRYGNSNGIDEIDFRTRNRLSLSVSQ RVADNMSVNLNSSLYSYWGNQDASQQYSVGFNHSLRSFSYTVSAIRTSNSGNSSNGDNDREYENSYMLAVSIPIGGSGKN KPLFSSLSTMVSHSEAGDTQLQLTTSGSRGDQNELTYGIGTSYGNRNDASSEQSVIGNMGYQSSVGQLGMTASANNNASR QLSVSASGSLVAHQGGVIAGPRLGDAPFAIINAQGAGGAKVFNGRGAKIDSNGYALVPSLTPYRENTIAIDYKDLPETVD ILENHKVVVPRMGAMIPVKMKTMTGNPMMLIVRDENKEFLPIGTDLLDADGVSQSIVGQGGMAFIRGWDPVSQPITATLN GGIDKCVIKPDAKIDTATKTVQIIQLEVICLRR
Specific function: Probable porin-like protein necessary for the assembly of a pilin-type protein [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786332, Length=838, Percent_Identity=34.1288782816229, Blast_Score=430, Evalue=1e-121, Organism=Escherichia coli, GI1790772, Length=801, Percent_Identity=31.4606741573034, Blast_Score=372, Evalue=1e-104, Organism=Escherichia coli, GI1789533, Length=834, Percent_Identity=31.294964028777, Blast_Score=363, Evalue=1e-101, Organism=Escherichia coli, GI1787172, Length=845, Percent_Identity=30.414201183432, Blast_Score=351, Evalue=1e-97, Organism=Escherichia coli, GI1788427, Length=839, Percent_Identity=28.8438617401669, Blast_Score=323, Evalue=3e-89, Organism=Escherichia coli, GI1786744, Length=862, Percent_Identity=29.8143851508121, Blast_Score=318, Evalue=9e-88, Organism=Escherichia coli, GI87081778, Length=838, Percent_Identity=28.1622911694511, Blast_Score=268, Evalue=1e-72, Organism=Escherichia coli, GI1789610, Length=800, Percent_Identity=23.875, Blast_Score=152, Evalue=1e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 90107; Mature: 90107
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPVEFNADFIHGGGVDVMRFMHENPVAPGVYDVTVIINGKNRGKHRIRFELSEGESTAE CCEEEECCCEEECCCHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCC PCFTLEQLDSIGLKIETSDTDLLVNGKAAPKDQCYNLRALIKDSHVNYNSGDLELSLTVP CHHHHHHHHHCCEEEECCCCEEEEECCCCCHHHHEEEEEEEEECCCCCCCCCEEEEEECC QFNLVHHPRGYIDSSLWDAGGTVGFLDYNSNVYSIFNGRSNSDVGSDNSNSYNSNIGLSA CEEEEECCCCCCCCHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEC GINLGEWRFRKRLNTTWSNSSGMHTQNLYGYAATDITALKSQLTIGDTNTQGSLFDSYAL CCCCHHHHHHHHCCCCCCCCCCCEECCCCEEEHHHHHHHHHEEEECCCCCCCCHHHHHHH RGVLLASDTRMLPEGIRNYSPIVRGIAETNARVTVTQRGQIIYETVVTPGAFELTDIGTM EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEEECCCC SYGGDLQMTITESDGRTRIQRIPFSAPPMLLYQGVSRFDFSAGQLNDSSINHNPAIVQGA CCCCEEEEEEECCCCCEEEEECCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCEEEEE YHYGLGNTYTLYGGAQVAENYRSVAIGNAFNTPLGGVSMDITHAKSELAGDRRSSGNSYK EEECCCCEEEEECCHHHHHCCCEEEECCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCEEE IDYSKYVGETDTNLTLAAYRYSSGGYYSFREASLDRYGNSNGIDEIDFRTRNRLSLSVSQ EEHHHHCCCCCCCEEEEEEEECCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHH RVADNMSVNLNSSLYSYWGNQDASQQYSVGFNHSLRSFSYTVSAIRTSNSGNSSNGDNDR HHHCCCEEEECCHHHHHCCCCCCCCEEECCCCCCHHHEEEEEEEEEECCCCCCCCCCCCC EYENSYMLAVSIPIGGSGKNKPLFSSLSTMVSHSEAGDTQLQLTTSGSRGDQNELTYGIG CCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEEC TSYGNRNDASSEQSVIGNMGYQSSVGQLGMTASANNNASRQLSVSASGSLVAHQGGVIAG CCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEEEECCCEEEC PRLGDAPFAIINAQGAGGAKVFNGRGAKIDSNGYALVPSLTPYRENTIAIDYKDLPETVD CCCCCCCEEEEECCCCCCCEEECCCCCEECCCCEEEECCCCCCCCCEEEEECCCCCHHHH ILENHKVVVPRMGAMIPVKMKTMTGNPMMLIVRDENKEFLPIGTDLLDADGVSQSIVGQG HHHCCEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCEEECCCCEECCCCCCHHHHCCC GMAFIRGWDPVSQPITATLNGGIDKCVIKPDAKIDTATKTVQIIQLEVICLRR CEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCHHEEEEEEEEEEEECC >Mature Secondary Structure MIPVEFNADFIHGGGVDVMRFMHENPVAPGVYDVTVIINGKNRGKHRIRFELSEGESTAE CCEEEECCCEEECCCHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCC PCFTLEQLDSIGLKIETSDTDLLVNGKAAPKDQCYNLRALIKDSHVNYNSGDLELSLTVP CHHHHHHHHHCCEEEECCCCEEEEECCCCCHHHHEEEEEEEEECCCCCCCCCEEEEEECC QFNLVHHPRGYIDSSLWDAGGTVGFLDYNSNVYSIFNGRSNSDVGSDNSNSYNSNIGLSA CEEEEECCCCCCCCHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEC GINLGEWRFRKRLNTTWSNSSGMHTQNLYGYAATDITALKSQLTIGDTNTQGSLFDSYAL CCCCHHHHHHHHCCCCCCCCCCCEECCCCEEEHHHHHHHHHEEEECCCCCCCCHHHHHHH RGVLLASDTRMLPEGIRNYSPIVRGIAETNARVTVTQRGQIIYETVVTPGAFELTDIGTM EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEEECCCC SYGGDLQMTITESDGRTRIQRIPFSAPPMLLYQGVSRFDFSAGQLNDSSINHNPAIVQGA CCCCEEEEEEECCCCCEEEEECCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCEEEEE YHYGLGNTYTLYGGAQVAENYRSVAIGNAFNTPLGGVSMDITHAKSELAGDRRSSGNSYK EEECCCCEEEEECCHHHHHCCCEEEECCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCEEE IDYSKYVGETDTNLTLAAYRYSSGGYYSFREASLDRYGNSNGIDEIDFRTRNRLSLSVSQ EEHHHHCCCCCCCEEEEEEEECCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHH RVADNMSVNLNSSLYSYWGNQDASQQYSVGFNHSLRSFSYTVSAIRTSNSGNSSNGDNDR HHHCCCEEEECCHHHHHCCCCCCCCEEECCCCCCHHHEEEEEEEEEECCCCCCCCCCCCC EYENSYMLAVSIPIGGSGKNKPLFSSLSTMVSHSEAGDTQLQLTTSGSRGDQNELTYGIG CCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEEC TSYGNRNDASSEQSVIGNMGYQSSVGQLGMTASANNNASRQLSVSASGSLVAHQGGVIAG CCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEEEECCCEEEC PRLGDAPFAIINAQGAGGAKVFNGRGAKIDSNGYALVPSLTPYRENTIAIDYKDLPETVD CCCCCCCEEEEECCCCCCCEEECCCCCEECCCCEEEECCCCCCCCCEEEEECCCCCHHHH ILENHKVVVPRMGAMIPVKMKTMTGNPMMLIVRDENKEFLPIGTDLLDADGVSQSIVGQG HHHCCEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCEEECCCCEECCCCCCHHHHCCC GMAFIRGWDPVSQPITATLNGGIDKCVIKPDAKIDTATKTVQIIQLEVICLRR CEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCHHEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8102362; 8202364; 9278503 [H]