| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153949071
Identifier: 153949071
GI number: 153949071
Start: 3871153
End: 3872655
Strand: Reverse
Name: 153949071
Synonym: YpsIP31758_3435
Alternate gene names: NA
Gene position: 3872655-3871153 (Counterclockwise)
Preceding gene: 153948157
Following gene: 153948599
Centisome position: 81.99
GC content: 48.24
Gene sequence:
>1503_bases ATGCAGAAAGCCCAACTCAATGACACGCCAGACATCAACGTCGATCTGGCTGAAAACGAGTTAGATGACATTTTAAAACG TTCTTTTCGCCCTCGAACTGACGAAGCTTCCGCCACAGTGCGCCGTGCCATAGGCACGCTTGCTGCGTATGCCAATAAAG GCCAAGTGAAAGTCAATCGTGATGTCGTACTGACCATTGAGTCTTTAGTCGCTGAAATTGACGAAAAACTTTCCGATCAA ATGAACCTTATTCTGCACCATAAAGAGTTCCAAAAGCTGGAATCAGCTTGGCGCGGGCTTAGCTATCTTGTTGATAATAC AGATGCTAATGAAACTTTAAAAATACGGGTACTGAACATTAGCCAAGATGAACTGGGGAAAACGCTTCGCCGTTATCGTG GCTCTGCATGGGATCAAAGTCCGATATTTAAACAGGTCTATGAACATGAATATGGGCAGTTTGGTGGGGAACCTTTTGGT TGCATGATCGGTGATTATGAATTCGATCACAGTCCACAGAGTGTGGCTCTGCTGACCGAGTTAGCCAAGGTGGCCGCCGC CGCTCACTGTCCTTTCATTACCTCTTCTTCCCCAAGCATCATGCAGATGAATAACTGGAGGGAGCTGGGTAACCCAAGGG ATATCGGCAAAATTTTTACCACACCTGAATATGCGCCATGGAGACGTTTACGTGAGAGTAATGACTCCCGCTATCTGGTA CTGACTCTGCCACGTTTTCTTTCGCGTCTGCCGTATGGTGCCAAAAATCATCCTATTGATGATTTTGCTTTTGAAGAAGT GGTTAGCCCTCATGCCAGTGAGGATTTCACTTGGGCGAATGCGGCCTATGCCATGGGCGTCAATATTAACCGGGCCTTCA ATGAATATGGTTGGTGTTCAAGGATCCGCGGTATTGAGTCGGGGGGGTCCGTAGAAGAACTTCCGGCCTATGCTTTTCCT TCTGACGAAGGCGGATATGAACTCACTTGTCCGACAGAATTGGCAATTTCGGACCGTCGTGAGAACGAGCTATCCAATGC TGGTTTTTTACCGCTGGTCTACCGTAAGAACTCAGACTTTGCCGCCTTTATCGGGTCGTGCACCCTGCATGCACCGGCAA ACTATGATGACCCCGATGCGACGGCGAACGCCAGATTATCGGCCCGTTTACCTTACATTTTTGCCACCTGTCGTTTCGCC CATTACCTCAAATGTATTGTGCGCGACAAAATTGGTTCGTTCCGCTCGCGGGATGACATGCAACTTTGGCTTAACGACTG GGTGATGAACTACGTCGATGGTGACCCCTCCATTTCAACAGAAGCCACTAAAGCTAAACGCCCGCTGGCCGCTGCGGAAG TTCAAGTTGAAGACGTAGAGGATGATCCTGGTTTTTACCGCGCTCACTTCTATTTACGCCCTCACTACCAACTTGAAGGT ATGACGGTTTCTCTGCGGCTGGTTTCTAAACTTCCATCCAACAAGGAAAGCGAAAAGAAATAA
Upstream 100 bases:
>100_bases TACAAAATCTTGCGACCGATGCACAGGGAACTATTTCGAAGCTCAGCCAGGATGATGATGTTTTAGTGGAAGATGACGAT GGAGAAAAATAGTGGAGAAC
Downstream 100 bases:
>100_bases GCGCTGTGAATATCACTCGCTTATTAGAGGGGGAATATAAACATAAATATCAAGGAGGTAAGGCCGAAATTAAATAGGAA AGTACATTTTTAATGAGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MQKAQLNDTPDINVDLAENELDDILKRSFRPRTDEASATVRRAIGTLAAYANKGQVKVNRDVVLTIESLVAEIDEKLSDQ MNLILHHKEFQKLESAWRGLSYLVDNTDANETLKIRVLNISQDELGKTLRRYRGSAWDQSPIFKQVYEHEYGQFGGEPFG CMIGDYEFDHSPQSVALLTELAKVAAAAHCPFITSSSPSIMQMNNWRELGNPRDIGKIFTTPEYAPWRRLRESNDSRYLV LTLPRFLSRLPYGAKNHPIDDFAFEEVVSPHASEDFTWANAAYAMGVNINRAFNEYGWCSRIRGIESGGSVEELPAYAFP SDEGGYELTCPTELAISDRRENELSNAGFLPLVYRKNSDFAAFIGSCTLHAPANYDDPDATANARLSARLPYIFATCRFA HYLKCIVRDKIGSFRSRDDMQLWLNDWVMNYVDGDPSISTEATKAKRPLAAAEVQVEDVEDDPGFYRAHFYLRPHYQLEG MTVSLRLVSKLPSNKESEKK
Sequences:
>Translated_500_residues MQKAQLNDTPDINVDLAENELDDILKRSFRPRTDEASATVRRAIGTLAAYANKGQVKVNRDVVLTIESLVAEIDEKLSDQ MNLILHHKEFQKLESAWRGLSYLVDNTDANETLKIRVLNISQDELGKTLRRYRGSAWDQSPIFKQVYEHEYGQFGGEPFG CMIGDYEFDHSPQSVALLTELAKVAAAAHCPFITSSSPSIMQMNNWRELGNPRDIGKIFTTPEYAPWRRLRESNDSRYLV LTLPRFLSRLPYGAKNHPIDDFAFEEVVSPHASEDFTWANAAYAMGVNINRAFNEYGWCSRIRGIESGGSVEELPAYAFP SDEGGYELTCPTELAISDRRENELSNAGFLPLVYRKNSDFAAFIGSCTLHAPANYDDPDATANARLSARLPYIFATCRFA HYLKCIVRDKIGSFRSRDDMQLWLNDWVMNYVDGDPSISTEATKAKRPLAAAEVQVEDVEDDPGFYRAHFYLRPHYQLEG MTVSLRLVSKLPSNKESEKK >Mature_500_residues MQKAQLNDTPDINVDLAENELDDILKRSFRPRTDEASATVRRAIGTLAAYANKGQVKVNRDVVLTIESLVAEIDEKLSDQ MNLILHHKEFQKLESAWRGLSYLVDNTDANETLKIRVLNISQDELGKTLRRYRGSAWDQSPIFKQVYEHEYGQFGGEPFG CMIGDYEFDHSPQSVALLTELAKVAAAAHCPFITSSSPSIMQMNNWRELGNPRDIGKIFTTPEYAPWRRLRESNDSRYLV LTLPRFLSRLPYGAKNHPIDDFAFEEVVSPHASEDFTWANAAYAMGVNINRAFNEYGWCSRIRGIESGGSVEELPAYAFP SDEGGYELTCPTELAISDRRENELSNAGFLPLVYRKNSDFAAFIGSCTLHAPANYDDPDATANARLSARLPYIFATCRFA HYLKCIVRDKIGSFRSRDDMQLWLNDWVMNYVDGDPSISTEATKAKRPLAAAEVQVEDVEDDPGFYRAHFYLRPHYQLEG MTVSLRLVSKLPSNKESEKK
Specific function: Unknown
COG id: COG3517
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56617; Mature: 56617
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKAQLNDTPDINVDLAENELDDILKRSFRPRTDEASATVRRAIGTLAAYANKGQVKVNR CCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECC DVVLTIESLVAEIDEKLSDQMNLILHHKEFQKLESAWRGLSYLVDNTDANETLKIRVLNI CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEEC SQDELGKTLRRYRGSAWDQSPIFKQVYEHEYGQFGGEPFGCMIGDYEFDHSPQSVALLTE CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHH LAKVAAAAHCPFITSSSPSIMQMNNWRELGNPRDIGKIFTTPEYAPWRRLRESNDSRYLV HHHHHHHHCCCEEECCCCCEEEECCHHHCCCCHHCCHHCCCCCCHHHHHHHHCCCCCEEE LTLPRFLSRLPYGAKNHPIDDFAFEEVVSPHASEDFTWANAAYAMGVNINRAFNEYGWCS EEHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCEEEECCCHHHHHHHCCHHH RIRGIESGGSVEELPAYAFPSDEGGYELTCPTELAISDRRENELSNAGFLPLVYRKNSDF HHCCCCCCCCHHHCCCEECCCCCCCEEEECCCHHHHCCCHHHHHCCCCCEEEEEECCCCC AAFIGSCTLHAPANYDDPDATANARLSARLPYIFATCRFAHYLKCIVRDKIGSFRSRDDM EEEECCEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH QLWLNDWVMNYVDGDPSISTEATKAKRPLAAAEVQVEDVEDDPGFYRAHFYLRPHYQLEG HHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHEEEEECCCCCCCEEEEEEEEECCEEECC MTVSLRLVSKLPSNKESEKK CEEEEEEHHHCCCCCCCCCC >Mature Secondary Structure MQKAQLNDTPDINVDLAENELDDILKRSFRPRTDEASATVRRAIGTLAAYANKGQVKVNR CCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECC DVVLTIESLVAEIDEKLSDQMNLILHHKEFQKLESAWRGLSYLVDNTDANETLKIRVLNI CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEEC SQDELGKTLRRYRGSAWDQSPIFKQVYEHEYGQFGGEPFGCMIGDYEFDHSPQSVALLTE CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHH LAKVAAAAHCPFITSSSPSIMQMNNWRELGNPRDIGKIFTTPEYAPWRRLRESNDSRYLV HHHHHHHHCCCEEECCCCCEEEECCHHHCCCCHHCCHHCCCCCCHHHHHHHHCCCCCEEE LTLPRFLSRLPYGAKNHPIDDFAFEEVVSPHASEDFTWANAAYAMGVNINRAFNEYGWCS EEHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCEEEECCCHHHHHHHCCHHH RIRGIESGGSVEELPAYAFPSDEGGYELTCPTELAISDRRENELSNAGFLPLVYRKNSDF HHCCCCCCCCHHHCCCEECCCCCCCEEEECCCHHHHCCCHHHHHCCCCCEEEEEECCCCC AAFIGSCTLHAPANYDDPDATANARLSARLPYIFATCRFAHYLKCIVRDKIGSFRSRDDM EEEECCEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH QLWLNDWVMNYVDGDPSISTEATKAKRPLAAAEVQVEDVEDDPGFYRAHFYLRPHYQLEG HHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHEEEEECCCCCCCEEEEEEEEECCEEECC MTVSLRLVSKLPSNKESEKK CEEEEEEHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA