Click here to switch to the map view.

The map label for this gene is araD [H]

Identifier: 153948932

GI number: 153948932

Start: 2213682

End: 2214377

Strand: Reverse

Name: araD [H]

Synonym: YpsIP31758_1910

Alternate gene names: 153948932

Gene position: 2214377-2213682 (Counterclockwise)

Preceding gene: 153947245

Following gene: 153950108

Centisome position: 46.88

GC content: 50.0

Gene sequence:

>696_bases
ATGCTCAACGAACTGAAGCAGCAAGTTCTTGCCGCTAATCTTGCTCTACCGCGCCATAATCTGGTGACATTCACTTGGGG
TAATGTTAGTGCTATCGATCGCCAAAAGGGTTTACTGGTGATTAAGCCTTCAGGTGTGGAATATGCGTCCATGACACTGG
ATGATATGGTGGTCGTGGAGTTGGAGAGCGGCAACGTCGTTGAGGGCAACAAAAAACCATCATCAGACACGGATACTCAC
CGCGTGCTGTATCTTAATTTCCCCCAAATTGGGGGCATAGTGCATACCCACTCCCGTCATGCAACTATTTGGGCGCAGGC
GGGGCTAGACTTGCCTGCTTGGGGGACAACCCATGCTGATTACTTCTATGGCTCCATCCCCTGTACCCGTTTGATGACAC
ATGAAGAAATTGCGGGTCGTTATGAATGGGAAACCGGTAATGTCATCGTTGATACTTTCCATGAAAGGGGCATCACCCCA
GATGCTGTACCTGCGGCGTTGGTGAACTCTCATGGGCCATTTGCCTGGGGTAGCAGTGCGGAGAATGCAGTACACAATGC
GGTAGTCTTGGAAGAGTTAGCGTATATGGGCATTTTCTCGCGTCAATTGAACCCGCAGTTGGGCGATATGCAACCGCAAC
TGCTGGATAAGCATTACTTACGTAAACATGGCAAGGATGCGTACTACGGCCAATAA

Upstream 100 bases:

>100_bases
TTTCCAGCCGATTTGTACGCAGTTTTTAGCTATTTACCCCATACCGGTTATTTCCTGCGGCGCTGAAAATGGAACAAATT
CAGTTATTCAGGATACGACG

Downstream 100 bases:

>100_bases
AGGCAAAACATAAATAATGAGCCCGTGTTCAGTCTTGCACGGGTTTTTCCAGCCAGAGCAGCGAATCGGTGACATCAAGC
ATCTTGGCTTCAATCTGTGC

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MLNELKQQVLAANLALPRHNLVTFTWGNVSAIDRQKGLLVIKPSGVEYASMTLDDMVVVELESGNVVEGNKKPSSDTDTH
RVLYLNFPQIGGIVHTHSRHATIWAQAGLDLPAWGTTHADYFYGSIPCTRLMTHEEIAGRYEWETGNVIVDTFHERGITP
DAVPAALVNSHGPFAWGSSAENAVHNAVVLEELAYMGIFSRQLNPQLGDMQPQLLDKHYLRKHGKDAYYGQ

Sequences:

>Translated_231_residues
MLNELKQQVLAANLALPRHNLVTFTWGNVSAIDRQKGLLVIKPSGVEYASMTLDDMVVVELESGNVVEGNKKPSSDTDTH
RVLYLNFPQIGGIVHTHSRHATIWAQAGLDLPAWGTTHADYFYGSIPCTRLMTHEEIAGRYEWETGNVIVDTFHERGITP
DAVPAALVNSHGPFAWGSSAENAVHNAVVLEELAYMGIFSRQLNPQLGDMQPQLLDKHYLRKHGKDAYYGQ
>Mature_231_residues
MLNELKQQVLAANLALPRHNLVTFTWGNVSAIDRQKGLLVIKPSGVEYASMTLDDMVVVELESGNVVEGNKKPSSDTDTH
RVLYLNFPQIGGIVHTHSRHATIWAQAGLDLPAWGTTHADYFYGSIPCTRLMTHEEIAGRYEWETGNVIVDTFHERGITP
DAVPAALVNSHGPFAWGSSAENAVHNAVVLEELAYMGIFSRQLNPQLGDMQPQLLDKHYLRKHGKDAYYGQ

Specific function: L-arabinose catabolism; third step. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=74.4588744588745, Blast_Score=368, Evalue=1e-103,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=74.025974025974, Blast_Score=361, Evalue=1e-101,
Organism=Escherichia coli, GI1790642, Length=230, Percent_Identity=60, Blast_Score=286, Evalue=8e-79,

Paralogues:

None

Copy number: 136 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 25630; Mature: 25630

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNELKQQVLAANLALPRHNLVTFTWGNVSAIDRQKGLLVIKPSGVEYASMTLDDMVVVE
CHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCEEEECCCCCCEEEEEECCEEEEE
LESGNVVEGNKKPSSDTDTHRVLYLNFPQIGGIVHTHSRHATIWAQAGLDLPAWGTTHAD
ECCCCEEECCCCCCCCCCCEEEEEEECCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCC
YFYGSIPCTRLMTHEEIAGRYEWETGNVIVDTFHERGITPDAVPAALVNSHGPFAWGSSA
EEECCCCHHHHHHHHHHCCEEEECCCCEEEEEHHHCCCCCCHHHHHHHCCCCCCCCCCCC
ENAVHNAVVLEELAYMGIFSRQLNPQLGDMQPQLLDKHYLRKHGKDAYYGQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLNELKQQVLAANLALPRHNLVTFTWGNVSAIDRQKGLLVIKPSGVEYASMTLDDMVVVE
CHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCEEEECCCCCCEEEEEECCEEEEE
LESGNVVEGNKKPSSDTDTHRVLYLNFPQIGGIVHTHSRHATIWAQAGLDLPAWGTTHAD
ECCCCEEECCCCCCCCCCCEEEEEEECCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCC
YFYGSIPCTRLMTHEEIAGRYEWETGNVIVDTFHERGITPDAVPAALVNSHGPFAWGSSA
EEECCCCHHHHHHHHHHCCEEEECCCCEEEEEHHHCCCCCCHHHHHHHCCCCCCCCCCCC
ENAVHNAVVLEELAYMGIFSRQLNPQLGDMQPQLLDKHYLRKHGKDAYYGQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3549454; 2261080; 2251150; 1630901; 9278503; 2034216; 2217198; 11732895 [H]