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The map label for this gene is rbsC1 [H]

Identifier: 153948856

GI number: 153948856

Start: 1092223

End: 1093251

Strand: Reverse

Name: rbsC1 [H]

Synonym: YpsIP31758_0911

Alternate gene names: 153948856

Gene position: 1093251-1092223 (Counterclockwise)

Preceding gene: 153949568

Following gene: 153947249

Centisome position: 23.15

GC content: 48.69

Gene sequence:

>1029_bases
ATGAGCGATCCCCCCCCCTTGGTAATGTCTCTGACACGGACCAGTAAATTCAGGAAGGCCATTCATCAATACGGGATCAT
ACTTGCCTTTGTTGGCTTGTGTGCGGTCATTGCTCTGGCTGGTGAATTTGCAGTAAACAGCGGGACATGGAGCGAGAATT
ATTTTTTATCACGGGATAATACACTCATTATTCTACGCCAGGTCTCGATCAACGGCATCCTGGCCATTGGGATGACGTTC
GTTATTATCACCGCGGGTGTTGATCTCTCCGTTGGCGCGGTTTTAGGCTTGGCCGGTATTGTCGCCGCGCGTTTTGCGAC
GAATAACAGTGCCATCGCCTTAGGGGGGACCGATTGGCCACTGTTAGTACCCATCGTGATTGCCATTGGCATCGGTTTAA
TCTGCGGCGCTATCAATGGCTTTATCTTAGGCAAATATCGTCTGCAACCCTTTATTGTCACAATGGGGATGTTATCTGTC
GCCCGTGGCCTGACATTACTGACTACTGGCGGAAACCCGGTATCACAATTAACCGATGAATTCCGTTGGTTAGGTAACGG
TTATATTTTGGGTATTCCCGTACCGGTGTTGATCTTTATTATTCTGTTCGCCATTGCCTGGTTTGTCTTGAATAAGATGA
CGTTTGGCCGTTACGTCTACGCGGTGGGCGGGAATGAAAAAAGTGCCCGCACATCCGGGATCAACGTATTACGAATTAAA
GTGGCGGTATATACCCTTTGCGGTATTTTGGCGGCGATCGCGGGTTTAATTTTAACCGCACGTACTGGCTCGGCACAAAC
TGGCGCTGGCGTATCCTATGAATTGGATGCTATCGCGGCGGTCGTTATTGGCGGCACCAGTATGGCTGGCGGTATTGGAA
CTCTGCGCGGAACCTTATTTGGTGTGCTGATAATAGGTGTGATGAACAATGGGCTTGATTTACTCGGCGTACAATCCTAT
TACCAGCAAATTATCAAAGGTGTTCTGATTGTCTTTGCTGTCATGCTTGACCCATCCCGTAAGCAATAA

Upstream 100 bases:

>100_bases
GAAATTATGGGCTCGGAGGCAACACAGGCCAAATTAATGTCGATGGCGGTATAAATCACGCCGAAATTCATATTATTACA
TTGCACTGAGAGCGTCGAAT

Downstream 100 bases:

>100_bases
CCTTCATAAACAATAATTTTCATAAACAATAACGTTTATAAACAACAATTTTTATAAAAAAATATCTACCAATAACAATG
TCTACAAATAACAATATCCA

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSDPPPLVMSLTRTSKFRKAIHQYGIILAFVGLCAVIALAGEFAVNSGTWSENYFLSRDNTLIILRQVSINGILAIGMTF
VIITAGVDLSVGAVLGLAGIVAARFATNNSAIALGGTDWPLLVPIVIAIGIGLICGAINGFILGKYRLQPFIVTMGMLSV
ARGLTLLTTGGNPVSQLTDEFRWLGNGYILGIPVPVLIFIILFAIAWFVLNKMTFGRYVYAVGGNEKSARTSGINVLRIK
VAVYTLCGILAAIAGLILTARTGSAQTGAGVSYELDAIAAVVIGGTSMAGGIGTLRGTLFGVLIIGVMNNGLDLLGVQSY
YQQIIKGVLIVFAVMLDPSRKQ

Sequences:

>Translated_342_residues
MSDPPPLVMSLTRTSKFRKAIHQYGIILAFVGLCAVIALAGEFAVNSGTWSENYFLSRDNTLIILRQVSINGILAIGMTF
VIITAGVDLSVGAVLGLAGIVAARFATNNSAIALGGTDWPLLVPIVIAIGIGLICGAINGFILGKYRLQPFIVTMGMLSV
ARGLTLLTTGGNPVSQLTDEFRWLGNGYILGIPVPVLIFIILFAIAWFVLNKMTFGRYVYAVGGNEKSARTSGINVLRIK
VAVYTLCGILAAIAGLILTARTGSAQTGAGVSYELDAIAAVVIGGTSMAGGIGTLRGTLFGVLIIGVMNNGLDLLGVQSY
YQQIIKGVLIVFAVMLDPSRKQ
>Mature_341_residues
SDPPPLVMSLTRTSKFRKAIHQYGIILAFVGLCAVIALAGEFAVNSGTWSENYFLSRDNTLIILRQVSINGILAIGMTFV
IITAGVDLSVGAVLGLAGIVAARFATNNSAIALGGTDWPLLVPIVIAIGIGLICGAINGFILGKYRLQPFIVTMGMLSVA
RGLTLLTTGGNPVSQLTDEFRWLGNGYILGIPVPVLIFIILFAIAWFVLNKMTFGRYVYAVGGNEKSARTSGINVLRIKV
AVYTLCGILAAIAGLILTARTGSAQTGAGVSYELDAIAAVVIGGTSMAGGIGTLRGTLFGVLIIGVMNNGLDLLGVQSYY
QQIIKGVLIVFAVMLDPSRKQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=297, Percent_Identity=49.4949494949495, Blast_Score=251, Evalue=7e-68,
Organism=Escherichia coli, GI1790524, Length=290, Percent_Identity=41.0344827586207, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1788896, Length=284, Percent_Identity=40.8450704225352, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1789992, Length=375, Percent_Identity=34.9333333333333, Blast_Score=175, Evalue=5e-45,
Organism=Escherichia coli, GI145693152, Length=275, Percent_Identity=33.0909090909091, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1788471, Length=289, Percent_Identity=38.4083044982699, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI145693214, Length=261, Percent_Identity=37.5478927203065, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI87082395, Length=282, Percent_Identity=33.3333333333333, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787794, Length=322, Percent_Identity=31.055900621118, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=29.020979020979, Blast_Score=101, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35900; Mature: 35769

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPPPLVMSLTRTSKFRKAIHQYGIILAFVGLCAVIALAGEFAVNSGTWSENYFLSRDN
CCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCC
TLIILRQVSINGILAIGMTFVIITAGVDLSVGAVLGLAGIVAARFATNNSAIALGGTDWP
EEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH
LLVPIVIAIGIGLICGAINGFILGKYRLQPFIVTMGMLSVARGLTLLTTGGNPVSQLTDE
HHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
FRWLGNGYILGIPVPVLIFIILFAIAWFVLNKMTFGRYVYAVGGNEKSARTSGINVLRIK
HHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHCCCEEEEHH
VAVYTLCGILAAIAGLILTARTGSAQTGAGVSYELDAIAAVVIGGTSMAGGIGTLRGTLF
HHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEHHHHEEEEECCCCCCCCHHHHHHHHH
GVLIIGVMNNGLDLLGVQSYYQQIIKGVLIVFAVMLDPSRKQ
HHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDPPPLVMSLTRTSKFRKAIHQYGIILAFVGLCAVIALAGEFAVNSGTWSENYFLSRDN
CCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCC
TLIILRQVSINGILAIGMTFVIITAGVDLSVGAVLGLAGIVAARFATNNSAIALGGTDWP
EEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH
LLVPIVIAIGIGLICGAINGFILGKYRLQPFIVTMGMLSVARGLTLLTTGGNPVSQLTDE
HHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
FRWLGNGYILGIPVPVLIFIILFAIAWFVLNKMTFGRYVYAVGGNEKSARTSGINVLRIK
HHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHCCCEEEEHH
VAVYTLCGILAAIAGLILTARTGSAQTGAGVSYELDAIAAVVIGGTSMAGGIGTLRGTLF
HHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEHHHHEEEEECCCCCCCCHHHHHHHHH
GVLIIGVMNNGLDLLGVQSYYQQIIKGVLIVFAVMLDPSRKQ
HHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]