BacMap

Definition	Yersinia pseudotuberculosis IP 31758, complete genome.
Accession	NC_009708
Length	4,723,306

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The map label for this gene is ydfG [H]

Identifier: 153948729

GI number: 153948729

Start: 2160491

End: 2161240

Strand: Direct

Name: ydfG [H]

Synonym: YpsIP31758_1864

Alternate gene names: 153948729

Gene position: 2160491-2161240 (Clockwise)

Preceding gene: 153949237

Following gene: 153947867

Centisome position: 45.74

GC content: 47.73

Gene sequence:

>750_bases
ATGATCATATTCGTCACTGGTGCGACATCAGGTTTTGGTGAGGCGATTGCCCGTAAATTTATTAGCCACGGTCATCAGGT
CATTGCCGCCGGCCGCCGTCAGGAACGTCTGGAAGCGCTACAAGCCGAACTGGGTGCACAACTGCACATCGTACGTCTGG
ACGTGCGTAATCGCGCAGCTATTCAACAAGTTATTGATGAATTACCTGCTGAGCTGAGGAATATCGACTTATTGGTAAAC
AACGCCGGGTTGGCATTGGGATTAGAGCCAGCACATAAAGCCAACGTTGATGATTGGGATACAATGATTGATACCAATAC
CAAAGGGTTGGTAAATATGACTCGAGCCTTATTACCTGCGATGGTTGAACGTAATGTGGGACACATTATTAATATTGGCT
CTACCGCGGCTAATTGGCCATACGCGGGGGGAAATGTGTACGGCGCGACAAAAGCGTTTGTTAAACAATTTAGTTTGGGT
TTACGTGCCGACCTACATGGCACTCATATCCGTGTTACCGATATTGAGCCCGGCCTGGTCGGCGGTACTGAGTTTTCAGC
GGTTCGTTTTAAAGGTGATGGAGAAAAGGTCAATAAAACCTACGATGGTGCAGATCCCCTGATGCCAGAAGATATCGCTG
AAGCTGTTTATTGGGTTGCAACGCTCCCTGCCCGCGTCAATATTAACTCATTGGAAATGATGCCAGTAAGTCAGTCTTTT
GCTGGGCTGAATATTCATCGCGGTTCCTAA

Upstream 100 bases:

>100_bases
CTAGCGGCAAGCCGATACCTAAGTGATGGATTCCACTCTGACTCAGAATATGTTAATGATATCAATTAGATTATTGGTAA
CAACAAATTAAGGAATCTCT

Downstream 100 bases:

>100_bases
AACCGGCTTATTGGGTGGCAGTCGCCGCCCTGCACTGATTTAGCCGTAACGTCGAGTTACTTTACATACTTTAAACCAGG
CTGCTGCTGGCCTAGTGTAT

Product: 3-hydroxy acid dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MIIFVTGATSGFGEAIARKFISHGHQVIAAGRRQERLEALQAELGAQLHIVRLDVRNRAAIQQVIDELPAELRNIDLLVN
NAGLALGLEPAHKANVDDWDTMIDTNTKGLVNMTRALLPAMVERNVGHIINIGSTAANWPYAGGNVYGATKAFVKQFSLG
LRADLHGTHIRVTDIEPGLVGGTEFSAVRFKGDGEKVNKTYDGADPLMPEDIAEAVYWVATLPARVNINSLEMMPVSQSF
AGLNIHRGS

Sequences:

>Translated_249_residues
MIIFVTGATSGFGEAIARKFISHGHQVIAAGRRQERLEALQAELGAQLHIVRLDVRNRAAIQQVIDELPAELRNIDLLVN
NAGLALGLEPAHKANVDDWDTMIDTNTKGLVNMTRALLPAMVERNVGHIINIGSTAANWPYAGGNVYGATKAFVKQFSLG
LRADLHGTHIRVTDIEPGLVGGTEFSAVRFKGDGEKVNKTYDGADPLMPEDIAEAVYWVATLPARVNINSLEMMPVSQSF
AGLNIHRGS
>Mature_249_residues
MIIFVTGATSGFGEAIARKFISHGHQVIAAGRRQERLEALQAELGAQLHIVRLDVRNRAAIQQVIDELPAELRNIDLLVN
NAGLALGLEPAHKANVDDWDTMIDTNTKGLVNMTRALLPAMVERNVGHIINIGSTAANWPYAGGNVYGATKAFVKQFSLG
LRADLHGTHIRVTDIEPGLVGGTEFSAVRFKGDGEKVNKTYDGADPLMPEDIAEAVYWVATLPARVNINSLEMMPVSQSF
AGLNIHRGS

Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=35.0806451612903, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI20149619, Length=229, Percent_Identity=31.8777292576419, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI22507405, Length=249, Percent_Identity=32.5301204819277, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI150247226, Length=214, Percent_Identity=30.8411214953271, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI40548397, Length=179, Percent_Identity=34.0782122905028, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI214010158, Length=179, Percent_Identity=34.0782122905028, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI214010156, Length=179, Percent_Identity=34.0782122905028, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI22758144, Length=179, Percent_Identity=34.0782122905028, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI7705855, Length=191, Percent_Identity=29.3193717277487, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4557649, Length=178, Percent_Identity=30.3370786516854, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI10190704, Length=228, Percent_Identity=29.3859649122807, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI7657478, Length=212, Percent_Identity=31.1320754716981, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI157739938, Length=187, Percent_Identity=26.7379679144385, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI19743808, Length=179, Percent_Identity=31.2849162011173, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI32483357, Length=231, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI19923817, Length=188, Percent_Identity=27.6595744680851, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI50726952, Length=180, Percent_Identity=32.7777777777778, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=29.3193717277487, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI119392083, Length=198, Percent_Identity=28.2828282828283, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI5031737, Length=200, Percent_Identity=28.5, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI40254992, Length=180, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4503817, Length=185, Percent_Identity=25.9459459459459, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI66933014, Length=167, Percent_Identity=29.940119760479, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI44680136, Length=187, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI44680133, Length=187, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI17738292, Length=187, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1787820, Length=247, Percent_Identity=74.0890688259109, Blast_Score=389, Evalue=1e-109,
Organism=Escherichia coli, GI1787335, Length=179, Percent_Identity=31.2849162011173, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87082100, Length=181, Percent_Identity=35.9116022099448, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786812, Length=228, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790717, Length=180, Percent_Identity=28.8888888888889, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87082160, Length=183, Percent_Identity=28.4153005464481, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787526, Length=224, Percent_Identity=26.7857142857143, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=235, Percent_Identity=25.9574468085106, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=242, Percent_Identity=26.0330578512397, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=246, Percent_Identity=30.0813008130081, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=238, Percent_Identity=26.4705882352941, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=225, Percent_Identity=26.6666666666667, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=234, Percent_Identity=23.9316239316239, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=240, Percent_Identity=27.9166666666667, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=218, Percent_Identity=30.7339449541284, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=240, Percent_Identity=27.0833333333333, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=190, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=210, Percent_Identity=29.5238095238095, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=247, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=180, Percent_Identity=25.5555555555556, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=186, Percent_Identity=26.8817204301075, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=239, Percent_Identity=23.0125523012552, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=28.6458333333333, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17557780, Length=190, Percent_Identity=27.3684210526316, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17559552, Length=187, Percent_Identity=28.8770053475936, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=239, Percent_Identity=28.0334728033473, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI212646214, Length=187, Percent_Identity=26.7379679144385, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=26.1780104712042, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17557668, Length=187, Percent_Identity=28.8770053475936, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=179, Percent_Identity=30.1675977653631, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=247, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=187, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=36.734693877551, Blast_Score=161, Evalue=7e-41,
Organism=Saccharomyces cerevisiae, GI6322227, Length=187, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=176, Percent_Identity=29.5454545454545, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=184, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007236, Length=253, Percent_Identity=33.596837944664, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24641388, Length=259, Percent_Identity=32.046332046332, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI21358495, Length=225, Percent_Identity=31.1111111111111, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI23397609, Length=180, Percent_Identity=33.8888888888889, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=32.9608938547486, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI281364494, Length=249, Percent_Identity=30.9236947791165, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI116007234, Length=253, Percent_Identity=32.0158102766798, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24648693, Length=254, Percent_Identity=31.1023622047244, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI21355889, Length=254, Percent_Identity=31.1023622047244, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI161076933, Length=181, Percent_Identity=32.5966850828729, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24641232, Length=258, Percent_Identity=30.2325581395349, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24584748, Length=181, Percent_Identity=32.5966850828729, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI116007238, Length=183, Percent_Identity=34.9726775956284, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24663911, Length=253, Percent_Identity=26.4822134387352, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571387, Length=253, Percent_Identity=28.8537549407115, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=30.5699481865285, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24584744, Length=181, Percent_Identity=30.939226519337, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28574402, Length=181, Percent_Identity=30.939226519337, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28571526, Length=183, Percent_Identity=29.5081967213115, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24644339, Length=182, Percent_Identity=28.021978021978, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21357041, Length=232, Percent_Identity=27.1551724137931, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24584752, Length=184, Percent_Identity=28.804347826087, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007232, Length=186, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24639444, Length=235, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355631, Length=226, Percent_Identity=26.5486725663717, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17737361, Length=191, Percent_Identity=30.8900523560209, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21357673, Length=187, Percent_Identity=25.668449197861, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26927; Mature: 26927

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIFVTGATSGFGEAIARKFISHGHQVIAAGRRQERLEALQAELGAQLHIVRLDVRNRAA
CEEEEECCCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCEEEEEEEECCCHHH
IQQVIDELPAELRNIDLLVNNAGLALGLEPAHKANVDDWDTMIDTNTKGLVNMTRALLPA
HHHHHHHHHHHHHCEEEEEECCCEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHH
MVERNVGHIINIGSTAANWPYAGGNVYGATKAFVKQFSLGLRADLHGTHIRVTDIEPGLV
HHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCC
GGTEFSAVRFKGDGEKVNKTYDGADPLMPEDIAEAVYWVATLPARVNINSLEMMPVSQSF
CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCEEEEECCCCC
AGLNIHRGS
CCCEEECCC
>Mature Secondary Structure
MIIFVTGATSGFGEAIARKFISHGHQVIAAGRRQERLEALQAELGAQLHIVRLDVRNRAA
CEEEEECCCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCEEEEEEEECCCHHH
IQQVIDELPAELRNIDLLVNNAGLALGLEPAHKANVDDWDTMIDTNTKGLVNMTRALLPA
HHHHHHHHHHHHHCEEEEEECCCEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHH
MVERNVGHIINIGSTAANWPYAGGNVYGATKAFVKQFSLGLRADLHGTHIRVTDIEPGLV
HHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCC
GGTEFSAVRFKGDGEKVNKTYDGADPLMPEDIAEAVYWVATLPARVNINSLEMMPVSQSF
CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCEEEEECCCCC
AGLNIHRGS
CCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]