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The map label for this gene is papC [H]

Identifier: 153948600

GI number: 153948600

Start: 724708

End: 727188

Strand: Direct

Name: papC [H]

Synonym: YpsIP31758_0614

Alternate gene names: 153948600

Gene position: 724708-727188 (Clockwise)

Preceding gene: 153948028

Following gene: 153949184

Centisome position: 15.34

GC content: 49.7

Gene sequence:

>2481_bases
ATGAGAATAATTAAAAAAATTCCTATAGCAATGACTACATCATTGATAATGCTCAGTGGAACAGCCAGTGCTATTGATTT
TAATACTGATGCAATGGATGCCAACGACAAACAGAATATTGATCTTTCTCATTTTACGAACGTTGGCTATATCATGCCGG
GTGAGTATCGGTTGGAGATCAATGTCAATAATCACCGTATTCCTGAGCAGGTGATCGCTTTTTATACCCGTGACGATGAA
CCGGATAGCAGTGAGGTGTGCCTACCGGAAGCGGTGATGGAGCAGTTTGGTCTGAAGCCTGATGTGCTGCAAAAGATCAC
ATTCTGGCATGAGGGGCAATGCGCAGATTTGCGTGAGCTGGCGGGATTAACCACGGAGGTTGATTTAGCGACCAGCACGT
TAGCTATCAATGTCCCGCAAGCCTGGATGGAATACAGTGACAGCAATTGGGTGCCGTCTTCTCAATGGGATGAGGGGATC
CCTGGGTTTCTGTTGGATTACAACGTGAACTCGCTGTTTAGTAAGCCGAAAGAGAGTGGTTCCACCCGGAATATCAGTCT
CAACGGTACGTCGGGTCTGAATGCGGGTCCCTGGCGGTTACGGGGCGATTATCAAGGGAACTACAGCCACAGCAGTGGCG
AGTATAACTCGTCTACCAGTACATTTGACTGGAGCCGGATCTATATGTACCGGGCGATCAAATCACTGGCAGCCACCTTG
AGCGTTGGTGAAAACTATTTCGCCTCCAGCCTTTTCGATACGTTCCGTTATGCTGGCGCCAGTTTGTCCAGCGATGAACG
TATGTTGCCACCTAATTTACGCGGTTATGCCCCTGAGGTTAGCGGGATAGCCAGAACCAACGCCAAAGTGACGGTCTCCC
AGCAGGGGCGCATACTGTATCAAACCACCGTGGCTTCCGGCCCTTTCCGTATTCAGGAACTGAGTGATTCTGTTTCCGGG
CGGTTGGATGTCAGCGTGGAGGAGCAGGATGGGACGGTACAAACTTTTCAGGTGGATACTGCCGCAGTTCCTTACCTGAC
CCGGCCTGGTGCCATCCGCTATAAAACATCGGTGGGCCAGCCCTCTACTCTGAATCATGGGACTGAAGGCCCGGTATTTG
CCAGTGGCGAATTTTCTTGGGGGGTCACTAATAGCTGGTCACTGTTTGGCGGGGCCATTGGCTCGGGTGATTACAATGCC
GTGTCGGTCGGGGTTGGCCGTGATTTATATGCATTTGGTGCCATTTCAACCGATATCACCCAAACCCGTGCATCGGGCCT
CCCCAACCAAGATACGCAGAGCGGAAAATCGTTGCGCGTCAGGTATGCTAAGCGTTTTGATGAGCTGAACAGCGACATCT
CGTTTGCGGGGTACCGTTTTTTTGAACGTGAATTCATGTCGATGAATCAGTATCTCAACACCCGTTATTTTGATAATGAC
CTTGGGCGCAACAAGGAAATGTATACGGTGACGGCGAGTAAAAATTTTCCTGACATCCAGACCAATGTCAATTTTTCATA
CAGCTACCAGAATTATTGGGATCAGCCCACGTCCAATAGCTACAGCGCGACGATCAGCCACGCTTTTGATGCTTTTTCTC
TCAAAGATATGACGGTCAACCTTTCTGCCAGCCGTAGCAAAAATAACGGCGTGAATGATGATGTGCTGTATCTGAGTTTT
TCGGTGCCATTAGGCAATCAACAAACCCTCAGCTACAGTGGGCAACATAATGGTCAAGGGAACAACCAGACCGTGAATTA
TTCTAACAGCTCGGCTATCGACAGCAGCTATCGGTTATCCGCAGGGGTTAACAACAGCAATGATAATGGGGCGCGTAGCC
AGTTCAGCGGTTTTTATATTCATCGCAGCAGCATTGCTGAAACCAGCCTTAATGTCGCTTATGCGCAGGATGATTTTACC
TCGACCGGGGTTTCTATGCGCGGGGGCGCGACGGTTACTGCGAAAGGTGCGGCATTACACGGCCCCGGTATGAGTGGTGG
TACCCGCCTGATGGTCAATACCGATGATATTGCAGGCGTCCCGCTGGAAGAGCGGAATATTCGTTCAAACCGTTTTGGTA
TTGCTGTGCTGAATAATATTAACAGCTACTATCGTACAGATACGCGTATCGATATTAATCAGTTGGCTGATGATGTTGAA
GTTAAGCAATCTGCGGTGGAGTTTGCCCTGACCGAAGGGGCCATTGGTTATCGCCGTTTCGCCATGATGAAAGGGGAGAA
GGTACTGGCAACTATCAGCCTGACTGACAGTAGCCATCCGCCTTTTGGTAGTTTGGTCATGAGTGCCAAAGGGCAGGAAC
TGGGGATTGTTAGCGATGACGGTTTTACTTACCTGAGTGGAGTGGAGCCGGGAGAAACACTGAATGTACTTTGGAGTGGC
GCTAAGCAGTGCCAGGTGGCGATCCCAGCAGCATTACAGCCGCAGGCGCAAATATTATTACCCTGCATATCCGTTAACTA
A

Upstream 100 bases:

>100_bases
AGCAGGGGAAATCATCACACATAACATGATGATTTTTAGCTATTCTTACAACATATCCATTTGCTGTTATTACGGGCAGA
TTTTTCTGGTGAGTAACTGA

Downstream 100 bases:

>100_bases
GATTGAGGTGATATACCATGAAGAAGCTTTCATTAATCGCATTGACCAGCACATTGGTATTCACCAGTTATGCCGCCAAT
GCCGCGATTGCATTAGATCG

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 826; Mature: 826

Protein sequence:

>826_residues
MRIIKKIPIAMTTSLIMLSGTASAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYTRDDE
PDSSEVCLPEAVMEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQAWMEYSDSNWVPSSQWDEGI
PGFLLDYNVNSLFSKPKESGSTRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEYNSSTSTFDWSRIYMYRAIKSLAATL
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG
RLDVSVEEQDGTVQTFQVDTAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVTNSWSLFGGAIGSGDYNA
VSVGVGRDLYAFGAISTDITQTRASGLPNQDTQSGKSLRVRYAKRFDELNSDISFAGYRFFEREFMSMNQYLNTRYFDND
LGRNKEMYTVTASKNFPDIQTNVNFSYSYQNYWDQPTSNSYSATISHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF
SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARSQFSGFYIHRSSIAETSLNVAYAQDDFT
STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVMSAKGQELGIVSDDGFTYLSGVEPGETLNVLWSG
AKQCQVAIPAALQPQAQILLPCISVN

Sequences:

>Translated_826_residues
MRIIKKIPIAMTTSLIMLSGTASAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYTRDDE
PDSSEVCLPEAVMEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQAWMEYSDSNWVPSSQWDEGI
PGFLLDYNVNSLFSKPKESGSTRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEYNSSTSTFDWSRIYMYRAIKSLAATL
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG
RLDVSVEEQDGTVQTFQVDTAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVTNSWSLFGGAIGSGDYNA
VSVGVGRDLYAFGAISTDITQTRASGLPNQDTQSGKSLRVRYAKRFDELNSDISFAGYRFFEREFMSMNQYLNTRYFDND
LGRNKEMYTVTASKNFPDIQTNVNFSYSYQNYWDQPTSNSYSATISHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF
SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARSQFSGFYIHRSSIAETSLNVAYAQDDFT
STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVMSAKGQELGIVSDDGFTYLSGVEPGETLNVLWSG
AKQCQVAIPAALQPQAQILLPCISVN
>Mature_826_residues
MRIIKKIPIAMTTSLIMLSGTASAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYTRDDE
PDSSEVCLPEAVMEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQAWMEYSDSNWVPSSQWDEGI
PGFLLDYNVNSLFSKPKESGSTRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEYNSSTSTFDWSRIYMYRAIKSLAATL
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG
RLDVSVEEQDGTVQTFQVDTAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVTNSWSLFGGAIGSGDYNA
VSVGVGRDLYAFGAISTDITQTRASGLPNQDTQSGKSLRVRYAKRFDELNSDISFAGYRFFEREFMSMNQYLNTRYFDND
LGRNKEMYTVTASKNFPDIQTNVNFSYSYQNYWDQPTSNSYSATISHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF
SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARSQFSGFYIHRSSIAETSLNVAYAQDDFT
STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVMSAKGQELGIVSDDGFTYLSGVEPGETLNVLWSG
AKQCQVAIPAALQPQAQILLPCISVN

Specific function: Involved in the export and assembly of pili subunits across the outer membrane. Forms a hexameric ring-shaped pore in the outer bacterial membrane. The 2 nanometer-diameter pore allows the passage of the thin tip fibrillum. As for the rod, it probably unw

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=821, Percent_Identity=35.809987819732, Blast_Score=508, Evalue=1e-145,
Organism=Escherichia coli, GI1790772, Length=831, Percent_Identity=29.7232250300842, Blast_Score=295, Evalue=1e-80,
Organism=Escherichia coli, GI1789533, Length=827, Percent_Identity=28.2950423216445, Blast_Score=277, Evalue=2e-75,
Organism=Escherichia coli, GI1786332, Length=852, Percent_Identity=27.6995305164319, Blast_Score=270, Evalue=3e-73,
Organism=Escherichia coli, GI1786744, Length=838, Percent_Identity=27.0883054892601, Blast_Score=251, Evalue=2e-67,
Organism=Escherichia coli, GI1787172, Length=836, Percent_Identity=27.8708133971292, Blast_Score=248, Evalue=1e-66,
Organism=Escherichia coli, GI1788427, Length=836, Percent_Identity=26.4354066985646, Blast_Score=235, Evalue=9e-63,
Organism=Escherichia coli, GI1789610, Length=793, Percent_Identity=22.9508196721311, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 90377; Mature: 90377

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIKKIPIAMTTSLIMLSGTASAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEI
CCCHHHCCHHHEEEEEEEECCCCEEECCCCCCCCCCCCCCCHHHHCCCCEEECCCEEEEE
NVNNHRIPEQVIAFYTRDDEPDSSEVCLPEAVMEQFGLKPDVLQKITFWHEGQCADLREL
ECCCCCCHHHHEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHH
AGLTTEVDLATSTLAINVPQAWMEYSDSNWVPSSQWDEGIPGFLLDYNVNSLFSKPKESG
CCCCEEEEEEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCC
STRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEYNSSTSTFDWSRIYMYRAIKSLAATL
CEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILY
HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCEEEE
QTTVASGPFRIQELSDSVSGRLDVSVEEQDGTVQTFQVDTAAVPYLTRPGAIRYKTSVGQ
EEEECCCCEEEHHHHHCCCCEEEEEEECCCCEEEEEEECCCCCCCEECCCCEEEEECCCC
PSTLNHGTEGPVFASGEFSWGVTNSWSLFGGAIGSGDYNAVSVGVGRDLYAFGAISTDIT
CCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCEEEEECCCCEEEECCCCCCHH
QTRASGLPNQDTQSGKSLRVRYAKRFDELNSDISFAGYRFFEREFMSMNQYLNTRYFDND
HHHHCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEECCCC
LGRNKEMYTVTASKNFPDIQTNVNFSYSYQNYWDQPTSNSYSATISHAFDAFSLKDMTVN
CCCCCEEEEEEECCCCCCCCCCEEEEEECHHHCCCCCCCCCEEEHHHHCCCEEEEEEEEE
LSASRSKNNGVNDDVLYLSFSVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLS
EECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEE
AGVNNSNDNGARSQFSGFYIHRSSIAETSLNVAYAQDDFTSTGVSMRGGATVTAKGAALH
ECCCCCCCCCCHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCEEECCCEEEEECCCEEE
GPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
CCCCCCCCEEEEECCCCCCCCCHHCCCCCCCEEEEEEECCCHHHCCCCEEEHHHHHHHHH
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVMSAKGQELGIVSDD
HHHHHHHHHECCCCCCHHHHHEECCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEEECC
GFTYLSGVEPGETLNVLWSGAKQCQVAIPAALQPQAQILLPCISVN
CCEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRIIKKIPIAMTTSLIMLSGTASAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEI
CCCHHHCCHHHEEEEEEEECCCCEEECCCCCCCCCCCCCCCHHHHCCCCEEECCCEEEEE
NVNNHRIPEQVIAFYTRDDEPDSSEVCLPEAVMEQFGLKPDVLQKITFWHEGQCADLREL
ECCCCCCHHHHEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHH
AGLTTEVDLATSTLAINVPQAWMEYSDSNWVPSSQWDEGIPGFLLDYNVNSLFSKPKESG
CCCCEEEEEEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCC
STRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEYNSSTSTFDWSRIYMYRAIKSLAATL
CEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILY
HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCEEEE
QTTVASGPFRIQELSDSVSGRLDVSVEEQDGTVQTFQVDTAAVPYLTRPGAIRYKTSVGQ
EEEECCCCEEEHHHHHCCCCEEEEEEECCCCEEEEEEECCCCCCCEECCCCEEEEECCCC
PSTLNHGTEGPVFASGEFSWGVTNSWSLFGGAIGSGDYNAVSVGVGRDLYAFGAISTDIT
CCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCEEEEECCCCEEEECCCCCCHH
QTRASGLPNQDTQSGKSLRVRYAKRFDELNSDISFAGYRFFEREFMSMNQYLNTRYFDND
HHHHCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEECCCC
LGRNKEMYTVTASKNFPDIQTNVNFSYSYQNYWDQPTSNSYSATISHAFDAFSLKDMTVN
CCCCCEEEEEEECCCCCCCCCCEEEEEECHHHCCCCCCCCCEEEHHHHCCCEEEEEEEEE
LSASRSKNNGVNDDVLYLSFSVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLS
EECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEE
AGVNNSNDNGARSQFSGFYIHRSSIAETSLNVAYAQDDFTSTGVSMRGGATVTAKGAALH
ECCCCCCCCCCHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCEEECCCEEEEECCCEEE
GPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
CCCCCCCCEEEEECCCCCCCCCHHCCCCCCCEEEEEEECCCHHHCCCCEEEHHHHHHHHH
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVMSAKGQELGIVSDD
HHHHHHHHHECCCCCCHHHHHEECCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEEECC
GFTYLSGVEPGETLNVLWSGAKQCQVAIPAALQPQAQILLPCISVN
CCEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2897064; 1357526; 12399496; 2572580; 7909802; 9501230 [H]