Click here to switch to the map view.

The map label for this gene is 153948566

Identifier: 153948566

GI number: 153948566

Start: 2808154

End: 2809521

Strand: Reverse

Name: 153948566

Synonym: YpsIP31758_2485

Alternate gene names: NA

Gene position: 2809521-2808154 (Counterclockwise)

Preceding gene: 153947844

Following gene: 153949013

Centisome position: 59.48

GC content: 57.16

Gene sequence:

>1368_bases
ATGATATCGAATATTGAACGCACACTGAAAACCGGTGGCGACCCGCGTGCACTGGCGGATTTCACCACACTGCGGGGTGA
ATTAAATAAACTGGCCCACCCGGCCCGTCCGGATGTTGACTGGGCGCGGGTTGAGCAACTGTGTCTGGCGCTATTTCGCC
AGAACGGCGTTGAGTTACAGACTGCCGTTGATTTTACCCTGGCACGAACGCACACCGTTGGGTTGGCGGGCTTATGTGAA
GGGCTGGAACTGTTGGCGGGGTTGGTCTGCCATCAATGGCGTGGGTTATGGCCACCGCAAACGCATGCCCGGGTGGCGTT
ACTGGCCTGGTTGAGCGACCGGCTGCAGCAAGTGTGGCGCACCATGACGCTGTGCTACGGTGACCTGGCGCAGGTGTACC
GGGCAGAGCGGGCGCTGGAACAGTTGTGTACGCAGTTGCAAACGCTGGAGCTCAAACATTTGTGCAAGCTGGACGGGGTT
CGTTTGATGCTGCATAACGCGGCGCAGCGGTTGGAAAGTACCGAGGCCGTGTCTGGCCTTGCGAAACCACGGGGTGCCTC
TGAACCGCCCGAGTCGCTGCGATTTGCCTCTGTCCCGGTCAGTGAACCACTGGTGTATATTATCAGCGAACCGGCCCCGC
CACCTGTTCAGGTGGTTTTACCTGCCTCACCTCCGCGCTGGAAGGCGGGCCACGGTTTTGCCGCGGGGTTATCGTTGATG
GCGGTGCTGATGGCCGGCAGTTTCGTTATCTGGCAGTCGGTATCATCGGATCCCGTGAGGGAAACATTGCTGGCCACTGC
CAGTCCTTTGCCGATACCGCTGAGTGCTAACTCAATAGCTGAACTGAAAAAACAGGCTTCAGATGTTGAGTGGGCACGTC
TGGCGGAACCGGTGTTGCAAGCCAGTGCGACGCAGTTAGATCAACTGGCACAGTTACCGCCGTTATGGGCGCAGGCTCGG
GGGGATGCCTTGCTATCTCAGGCGCAACAACTGTGGCCCGCGAGTCAAGAGGTCAAACGGTTGAGCACTTTGTGGCAGCA
ACAGCGAGCAGCCGGTGCTGCGCCCTTGGTAGAGTTGAAACACTATGCATTGGCGCAAGACCGTTTGCGGCAACTGGCAG
AACGACTGAATAGTCTGGATGAGAAAAAACGCGGATATATGACGGTCTCCGAACTGAAATCTGCCGTCTTTGCTATCCAA
CAGCCGCTGGCACAGGCCGTGCCACTGGAAGAACTGCTGCGGCAATATCAGGAACAATTAGAATCAGGGCAAACTCCATC
CTCAGCACTGCGTCAACAGATTGACAGCCGGTTTAGTCAATTGCTGAACCGCTATGCGTTGCTGATCGCATCTCCTGGCG
TTCAGTAA

Upstream 100 bases:

>100_bases
CGTTTATGCCGGAGGGCAGGGTGTTGATGCGCCACCTTAAACAACAACACTACCTCAATCAGCGGGAGTCATTTTGATGC
GGGTTCCGGGAAGATAAACC

Downstream 100 bases:

>100_bases
ACACTCGGTTGCCAGGGAGGATTATTGGGCAGACGCGGTGATTACAGCGTGAAGTAGGGTTGGCTGTACTGGGGCGGCAG
GCGCAATATTTGAATATTAT

Product: ImpA domain-containing protein

Products: NA

Alternate protein names: ImpA Domain Protein; OmpA/MotB Domain-Containing Protein; Type VI Secretion System Protein VasL

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MISNIERTLKTGGDPRALADFTTLRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTVGLAGLCE
GLELLAGLVCHQWRGLWPPQTHARVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCTQLQTLELKHLCKLDGV
RLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQAR
GDALLSQAQQLWPASQEVKRLSTLWQQQRAAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQ
QPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLIASPGVQ

Sequences:

>Translated_455_residues
MISNIERTLKTGGDPRALADFTTLRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTVGLAGLCE
GLELLAGLVCHQWRGLWPPQTHARVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCTQLQTLELKHLCKLDGV
RLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQAR
GDALLSQAQQLWPASQEVKRLSTLWQQQRAAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQ
QPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLIASPGVQ
>Mature_455_residues
MISNIERTLKTGGDPRALADFTTLRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTVGLAGLCE
GLELLAGLVCHQWRGLWPPQTHARVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCTQLQTLELKHLCKLDGV
RLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQAR
GDALLSQAQQLWPASQEVKRLSTLWQQQRAAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQ
QPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLIASPGVQ

Specific function: Unknown

COG id: COG3515

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50143; Mature: 50143

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISNIERTLKTGGDPRALADFTTLRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQ
CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEH
TAVDFTLARTHTVGLAGLCEGLELLAGLVCHQWRGLWPPQTHARVALLAWLSDRLQQVWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
TMTLCYGDLAQVYRAERALEQLCTQLQTLELKHLCKLDGVRLMLHNAAQRLESTEAVSGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
CCCCCCCCCHHHCEECCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHH
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQ
HHHHHCCHHEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
ASATQLDQLAQLPPLWAQARGDALLSQAQQLWPASQEVKRLSTLWQQQRAAGAAPLVELK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
HYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQQPLAQAVPLEELLRQYQEQL
HHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ESGQTPSSALRQQIDSRFSQLLNRYALLIASPGVQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MISNIERTLKTGGDPRALADFTTLRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQ
CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEH
TAVDFTLARTHTVGLAGLCEGLELLAGLVCHQWRGLWPPQTHARVALLAWLSDRLQQVWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
TMTLCYGDLAQVYRAERALEQLCTQLQTLELKHLCKLDGVRLMLHNAAQRLESTEAVSGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
CCCCCCCCCHHHCEECCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHH
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQ
HHHHHCCHHEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
ASATQLDQLAQLPPLWAQARGDALLSQAQQLWPASQEVKRLSTLWQQQRAAGAAPLVELK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
HYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQQPLAQAVPLEELLRQYQEQL
HHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ESGQTPSSALRQQIDSRFSQLLNRYALLIASPGVQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA