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The map label for this gene is sodC [H]

Identifier: 153948541

GI number: 153948541

Start: 3723891

End: 3724478

Strand: Reverse

Name: sodC [H]

Synonym: YpsIP31758_3315

Alternate gene names: 153948541

Gene position: 3724478-3723891 (Counterclockwise)

Preceding gene: 153949823

Following gene: 153949051

Centisome position: 78.85

GC content: 50.51

Gene sequence:

>588_bases
ATGAAATTAAGTACATTATTGCTACCTGTTATTCTTTACTCCAGCGCAACACTGGCCGCTAACATGGCTGGCATGAATGA
TAAGGCTGGCATGAATGATAAGGCCAGTATGAATGATATGGCTAGCATGACTGTGGAAATCAACGAATCATTGCCACAAG
GTAATGGGAAAGCGCTTGGCACCGTGACGGTGACTGAAACCGCTTATGGCTTACTGTTTACGCCACATCTCACTGGGCTG
GCTCCGGGAATTCACGGTTTCCATCTGCATGAAAAACCCAGTTGTGCTCCGGGGATGAAAGATGGCAAGGCAGTGCCAGC
ATTGGCAGCCGGGGGGCATCTTGACCCAAATAAGACCGGGGTACACCTTGGTCCTTACAACGATAAAGGGCATCTGGGGG
ATCTGCCGGGATTGGTGGTTAATGCAGATGGCACCGCCACCTATCCCGTATTGGCTCCGCGCCTGAAATCGTTGTCAGAG
GTGAAACAGCATGCGTTAATGATCCATGCTGGCGGTGATAATTACTCTGATCATCCAATGCCTTTAGGCGGTGGTGGCGC
ACGGATGGCATGTGGAGTCATTGAGTAA

Upstream 100 bases:

>100_bases
TGTGTGCGGGAGTATGAAACATAAGTAATAATTAATCGTCAAAAGTTTCCTATTGACAAGGTTAAACCAGACTTAATCAA
CATATAAGGGATATAACAAT

Downstream 100 bases:

>100_bases
CCGTCTGATACAGTTAAACTGGCTACCCGAGCGTAGCCAGTTTGGTGGAGGCCGGGTAATCTGCGATAATCGGTCACTGA
TTTGAATAACGATAGAGATA

Product: copper/zinc superoxide dismutase

Products: NA

Alternate protein names: sodCI [H]

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKLSTLLLPVILYSSATLAANMAGMNDKAGMNDKASMNDMASMTVEINESLPQGNGKALGTVTVTETAYGLLFTPHLTGL
APGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSE
VKQHALMIHAGGDNYSDHPMPLGGGGARMACGVIE

Sequences:

>Translated_195_residues
MKLSTLLLPVILYSSATLAANMAGMNDKAGMNDKASMNDMASMTVEINESLPQGNGKALGTVTVTETAYGLLFTPHLTGL
APGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSE
VKQHALMIHAGGDNYSDHPMPLGGGGARMACGVIE
>Mature_195_residues
MKLSTLLLPVILYSSATLAANMAGMNDKAGMNDKASMNDMASMTVEINESLPQGNGKALGTVTVTETAYGLLFTPHLTGL
APGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSE
VKQHALMIHAGGDNYSDHPMPLGGGGARMACGVIE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=155, Percent_Identity=62.5806451612903, Blast_Score=189, Evalue=7e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 20057; Mature: 20057

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSTLLLPVILYSSATLAANMAGMNDKAGMNDKASMNDMASMTVEINESLPQGNGKALG
CCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEE
TVTVTETAYGLLFTPHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTG
EEEECCCCCEEEECCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCE
VHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHALMIHAGGDNYSDHPM
EEECCCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
PLGGGGARMACGVIE
CCCCCCCEEEEECCC
>Mature Secondary Structure
MKLSTLLLPVILYSSATLAANMAGMNDKAGMNDKASMNDMASMTVEINESLPQGNGKALG
CCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEE
TVTVTETAYGLLFTPHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTG
EEEECCCCCEEEECCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCE
VHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHALMIHAGGDNYSDHPM
EEECCCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
PLGGGGARMACGVIE
CCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9379906; 9391141; 11677609; 8869506; 10970746 [H]