| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153948470
Identifier: 153948470
GI number: 153948470
Start: 1770610
End: 1771803
Strand: Direct
Name: 153948470
Synonym: YpsIP31758_1521
Alternate gene names: NA
Gene position: 1770610-1771803 (Clockwise)
Preceding gene: 153948879
Following gene: 153947892
Centisome position: 37.49
GC content: 54.27
Gene sequence:
>1194_bases ATGAGCACCGGCGGTATCGGTGTCACGGTGGGCAGCAGCAGTACCAAAATGACCGATTCTGGTCAATCGATTTCCAGCGT GGGCAGCACGGTGGGCAGCGTACTGGGCAATGTCAGCATGACCGCCGGTGAAGACCTGAGGGTGCAAGGTGCCGAGGTGT TGGCCGGTAAAGACATCAATCTGACCATCAATGCCACCGGTGAAGGGAATGCGGCAAACAGCGGCGATATTGTGGTGCAA GGCAGCCAGCTCCAGGCCGGTGGCGATACCACGCTGGATGCGGCGCGTGATGTACTGCTACTCGGTGCTGCCAACACACA AAAAACCGACGGCAGCAACAGCAGCAGTGGCGGCAGTGTTGGCGTCAGTCTGGGTGTCAGTGGGGCCAGCAGTGGTCTGA GTATTTTTGCCAACGCCAATAAAGGTCAGGGAAGCGAGCACGGCGACGGCACCTCCTGGACTGAAACGACCCTTGACAGT GGCGGCACGCTGTTGGTGCACAGTGGCCGCGATACCTCACTGGTCGGTGCGCAGGTCAGCGGCGAAACGGTGAAGGTGGA GGTAGGCCGCGACCTGTTGCTGCAAAGCCAGCAGGACAGCGATAACTATGATGCCAAACAGCAAAATAGCAGTGTTGGCG GCAGTTTCAGCCCTGGCTCCATGACGGGCAGTATCAGTATCAATGGCAGCCAGGACAAGCTGAACAGCAACTTTGACTCG GTGCAGGAGCAGACGGGTATCTTTGCCGGCTCGGGTGGCTTTGATATCACGGTGGGTGGACATACCCAGCTTGACGGTGC GGTGATTGGCAGCACGGCGACAGCCGATAAAAACACGCTGGATACCGGGACACTGGGCTTCAGTGATATCGATAATCAAG CCGATTTCAAGGTTGAACATCAAAGTGTCGGTATCAGTACCGGGGGGAATATCGGCAGTCAGTTTGTTGGCAATATGGCC AACGGCTTGCTGGTCGGGGCCAATAACGAAGGCCACGCCGACAGCACCACCCATGCGGCCGTTTCTGAAGCTATGAGAGC GGCTCTTTTAGATATCAGGGTTTTTATGATGTCTATTTATGGGGTTTTTTATCAATCAGTTGAAGATATTGACTTTTTTA TCAGAGAGACAAAAGAATTTCCTTTCCCTGAAGACTATCAAGTTCCTGAACATTATAACTATCGTAGAGAATAA
Upstream 100 bases:
>100_bases AAATCCCTTCTTAACTGAATCTACCCTCGGCCTTACCGTCGGCACGGCGCAGCAGAGCGAGAGCGAATCGCACCTGTTCG AACAGAAAAAATCGGGCCTG
Downstream 100 bases:
>100_bases TGCGCTGGGTCTGGCTCTGAAGGGATGTGGTATCGCAGCACCCTGCCGAAGTCTGATAGCGAAGCAAGTTCTGGAGTTCG GTGTTAAAGCGGGTATTACG
Product: hypothetical protein
Products: NA
Alternate protein names: Filamentous Haemagglutinin Outer Membrane Protein; Hemagglutinin-Related Protein; Filamentous Hemagglutinin; Hemolysin; Hemagglutinin/Hemolysin-Related Protein; Adhesin; Filamentous Haemagglutinin; Adhesin/Hemagglutinin; Adhesin/Hemolysin; Large Exoprotein Involved In Heme Utilization Or Adhesion; ShlA/HecA/FhaA Exofamily Protein; Cell Surface Protein; Adhesin HecA Family; Hemagglutinin; Filamentous Hemagglutinin Outer Membrane Protein; Adhesin/Hemagglutinin/Hemolysin; Hemagglutinin-Like Secreted Protein; Hemolysin/Hemagglutinin-Like Protein; Contact-Dependent Inhibitor A; FhaB Protein; Adhesin/Haemagluttinin; Filamentous Hemagglutinin/Adhesin; Filamentous Haemagglutinin Family Protein; Filamentous Haemagglutinin N-TerminalAdhesin HecA; Filamentous Haemagglutinin Family Outer Membrane Protein; Contact-Dependent Inhibition Of Growth Factor CdiA; Large Exoprotein Involved In Heme Utilizationor Adhesion; Exoprotein Adhesin Or Hemolysin; Surface Adhesin; Filamentous Haemagglutinin Adhesin HecA; Member Of ShlA/HecA/FhaA Exoprotein Family; Hemolysin/Hemagglutinin-Like Protein HecA; Haemolysin/Haemagglutinin; AT-2 Family Transporter; Cell Surface Haemagluttinin Protein; Adhesin/Hemolysin Adhesin HecA; Outer Membrane Surface Heamagglutinin Protein; Large Surface Adhesin; Filamentous Hemagglutinin Protein; Filamentous Hemagglutinin / Adhesin; Hemagglutinin/Adhesin Repeat-Containing Protein; Hemagglutinin/Hemolysin Family Protein; Hemagglutinin-Like Protein; Hemagglutinin/Hemolysin- Related Exoprotein; Haemagglutinin/Haemolysin-Related Protein; Hemagglutination Activity Domain Protein; Fimbrial Adhesin; FHA-Like Protein
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MSTGGIGVTVGSSSTKMTDSGQSISSVGSTVGSVLGNVSMTAGEDLRVQGAEVLAGKDINLTINATGEGNAANSGDIVVQ GSQLQAGGDTTLDAARDVLLLGAANTQKTDGSNSSSGGSVGVSLGVSGASSGLSIFANANKGQGSEHGDGTSWTETTLDS GGTLLVHSGRDTSLVGAQVSGETVKVEVGRDLLLQSQQDSDNYDAKQQNSSVGGSFSPGSMTGSISINGSQDKLNSNFDS VQEQTGIFAGSGGFDITVGGHTQLDGAVIGSTATADKNTLDTGTLGFSDIDNQADFKVEHQSVGISTGGNIGSQFVGNMA NGLLVGANNEGHADSTTHAAVSEAMRAALLDIRVFMMSIYGVFYQSVEDIDFFIRETKEFPFPEDYQVPEHYNYRRE
Sequences:
>Translated_397_residues MSTGGIGVTVGSSSTKMTDSGQSISSVGSTVGSVLGNVSMTAGEDLRVQGAEVLAGKDINLTINATGEGNAANSGDIVVQ GSQLQAGGDTTLDAARDVLLLGAANTQKTDGSNSSSGGSVGVSLGVSGASSGLSIFANANKGQGSEHGDGTSWTETTLDS GGTLLVHSGRDTSLVGAQVSGETVKVEVGRDLLLQSQQDSDNYDAKQQNSSVGGSFSPGSMTGSISINGSQDKLNSNFDS VQEQTGIFAGSGGFDITVGGHTQLDGAVIGSTATADKNTLDTGTLGFSDIDNQADFKVEHQSVGISTGGNIGSQFVGNMA NGLLVGANNEGHADSTTHAAVSEAMRAALLDIRVFMMSIYGVFYQSVEDIDFFIRETKEFPFPEDYQVPEHYNYRRE >Mature_396_residues STGGIGVTVGSSSTKMTDSGQSISSVGSTVGSVLGNVSMTAGEDLRVQGAEVLAGKDINLTINATGEGNAANSGDIVVQG SQLQAGGDTTLDAARDVLLLGAANTQKTDGSNSSSGGSVGVSLGVSGASSGLSIFANANKGQGSEHGDGTSWTETTLDSG GTLLVHSGRDTSLVGAQVSGETVKVEVGRDLLLQSQQDSDNYDAKQQNSSVGGSFSPGSMTGSISINGSQDKLNSNFDSV QEQTGIFAGSGGFDITVGGHTQLDGAVIGSTATADKNTLDTGTLGFSDIDNQADFKVEHQSVGISTGGNIGSQFVGNMAN GLLVGANNEGHADSTTHAAVSEAMRAALLDIRVFMMSIYGVFYQSVEDIDFFIRETKEFPFPEDYQVPEHYNYRRE
Specific function: Unknown
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40545; Mature: 40414
Theoretical pI: Translated: 4.10; Mature: 4.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTGGIGVTVGSSSTKMTDSGQSISSVGSTVGSVLGNVSMTAGEDLRVQGAEVLAGKDIN CCCCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHCCCEECCCCCEEEECCEEEECCCEE LTINATGEGNAANSGDIVVQGSQLQAGGDTTLDAARDVLLLGAANTQKTDGSNSSSGGSV EEEEECCCCCCCCCCCEEEECCEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCEE GVSLGVSGASSGLSIFANANKGQGSEHGDGTSWTETTLDSGGTLLVHSGRDTSLVGAQVS EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCEEEEEEEC GETVKVEVGRDLLLQSQQDSDNYDAKQQNSSVGGSFSPGSMTGSISINGSQDKLNSNFDS CCEEEEECCCCEEEECCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCHHHHCCCHHH VQEQTGIFAGSGGFDITVGGHTQLDGAVIGSTATADKNTLDTGTLGFSDIDNQADFKVEH HHHHHCEEECCCCCEEEECCCCEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE QSVGISTGGNIGSQFVGNMANGLLVGANNEGHADSTTHAAVSEAMRAALLDIRVFMMSIY EEECCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GVFYQSVEDIDFFIRETKEFPFPEDYQVPEHYNYRRE HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure STGGIGVTVGSSSTKMTDSGQSISSVGSTVGSVLGNVSMTAGEDLRVQGAEVLAGKDIN CCCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHCCCEECCCCCEEEECCEEEECCCEE LTINATGEGNAANSGDIVVQGSQLQAGGDTTLDAARDVLLLGAANTQKTDGSNSSSGGSV EEEEECCCCCCCCCCCEEEECCEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCEE GVSLGVSGASSGLSIFANANKGQGSEHGDGTSWTETTLDSGGTLLVHSGRDTSLVGAQVS EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCEEEEEEEC GETVKVEVGRDLLLQSQQDSDNYDAKQQNSSVGGSFSPGSMTGSISINGSQDKLNSNFDS CCEEEEECCCCEEEECCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCHHHHCCCHHH VQEQTGIFAGSGGFDITVGGHTQLDGAVIGSTATADKNTLDTGTLGFSDIDNQADFKVEH HHHHHCEEECCCCCEEEECCCCEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE QSVGISTGGNIGSQFVGNMANGLLVGANNEGHADSTTHAAVSEAMRAALLDIRVFMMSIY EEECCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GVFYQSVEDIDFFIRETKEFPFPEDYQVPEHYNYRRE HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA