Click here to switch to the map view.

The map label for this gene is nlpC [H]

Identifier: 153948338

GI number: 153948338

Start: 2000509

End: 2000973

Strand: Direct

Name: nlpC [H]

Synonym: YpsIP31758_1732

Alternate gene names: 153948338

Gene position: 2000509-2000973 (Clockwise)

Preceding gene: 153947702

Following gene: 153948776

Centisome position: 42.35

GC content: 46.67

Gene sequence:

>465_bases
ATGCGGACGCGCTTTTGGATTTTTCTGATCAGTATGGTCCTTGCTGGTTGTAGCAGCCATACACCAACACCCAGTGGATA
CTTATCTGACTCCATTGTGGTGGTCGCTAAATTGAATGAGCAGTTACGGCAATGGGAGGGAACGCCATACCGTAACGGAG
GGTTAGATCAACGTGGTGTTGATTGCTCTGGTTTTGTTTACCGCACATTCCGTGATCGTTTTGATATGCAACTCCCCCGA
ACGACCCTTGCGCAAACCACCTTAGGCACTAAAGTCTCTCGTGATGAACTGATGCCTGGCGATTTAGTCTTCTTCAAAAC
AGGCAGTGGTCAGAATGGATTACATGTTGGTATCTATGATACCAATGATGAATTCATTCATGCTTCAACCAGTAAAGGCG
TCATTCGCTCGTCATTGGAGAATGTGTACTGGAAACGAGTTTACTGGCAGGCACGGCGTATTTGA

Upstream 100 bases:

>100_bases
GTAAACGCTGCGAATACGGCTGCAACTTCAGGTCAGAAGTGAGGCTTGAATAACTGACTTTTTGGCGAATTAGCTGAGCC
TTATCTCTGGTGAAATAGCG

Downstream 100 bases:

>100_bases
TTTTCTCTCGACAGGATAATAGGCAATTTTAGTTGACGACGACAGTCCCTCTCTTCTCGGCCTAAGGATATCATCAGCGA
ATATGCTATCTTAGTGGCTG

Product: NlpC/P60 family lipoprotein

Products: NA

Alternate protein names: ORF-17 [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MRTRFWIFLISMVLAGCSSHTPTPSGYLSDSIVVVAKLNEQLRQWEGTPYRNGGLDQRGVDCSGFVYRTFRDRFDMQLPR
TTLAQTTLGTKVSRDELMPGDLVFFKTGSGQNGLHVGIYDTNDEFIHASTSKGVIRSSLENVYWKRVYWQARRI

Sequences:

>Translated_154_residues
MRTRFWIFLISMVLAGCSSHTPTPSGYLSDSIVVVAKLNEQLRQWEGTPYRNGGLDQRGVDCSGFVYRTFRDRFDMQLPR
TTLAQTTLGTKVSRDELMPGDLVFFKTGSGQNGLHVGIYDTNDEFIHASTSKGVIRSSLENVYWKRVYWQARRI
>Mature_154_residues
MRTRFWIFLISMVLAGCSSHTPTPSGYLSDSIVVVAKLNEQLRQWEGTPYRNGGLDQRGVDCSGFVYRTFRDRFDMQLPR
TTLAQTTLGTKVSRDELMPGDLVFFKTGSGQNGLHVGIYDTNDEFIHASTSKGVIRSSLENVYWKRVYWQARRI

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788001, Length=140, Percent_Identity=70.7142857142857, Blast_Score=216, Evalue=5e-58,
Organism=Escherichia coli, GI1788501, Length=127, Percent_Identity=49.6062992125984, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787944, Length=126, Percent_Identity=39.6825396825397, Blast_Score=80, Evalue=5e-17,
Organism=Escherichia coli, GI1786421, Length=126, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 17577; Mature: 17577

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRFWIFLISMVLAGCSSHTPTPSGYLSDSIVVVAKLNEQLRQWEGTPYRNGGLDQRGV
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCC
DCSGFVYRTFRDRFDMQLPRTTLAQTTLGTKVSRDELMPGDLVFFKTGSGQNGLHVGIYD
CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEE
TNDEFIHASTSKGVIRSSLENVYWKRVYWQARRI
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTRFWIFLISMVLAGCSSHTPTPSGYLSDSIVVVAKLNEQLRQWEGTPYRNGGLDQRGV
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCC
DCSGFVYRTFRDRFDMQLPRTTLAQTTLGTKVSRDELMPGDLVFFKTGSGQNGLHVGIYD
CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEE
TNDEFIHASTSKGVIRSSLENVYWKRVYWQARRI
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]