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The map label for this gene is cybC1 [H]

Identifier: 153948308

GI number: 153948308

Start: 3664847

End: 3665230

Strand: Direct

Name: cybC1 [H]

Synonym: YpsIP31758_3255

Alternate gene names: 153948308

Gene position: 3664847-3665230 (Clockwise)

Preceding gene: 153948755

Following gene: 153947564

Centisome position: 77.59

GC content: 39.32

Gene sequence:

>384_bases
ATGCGAAAAATTCCAATAATTGCGGGCGTTTTCTCATTACTCATCACAAGTTGTACTTTTGCCGCGAGCCTTCAGGATGA
TATGAATATTCTGATAGCCAATTTGGGCATTGTAAGTTCATCAACCGATACAAAGGTCATTACCTCATCACTGGAAAAAA
TGCGTAATGCCGCCCTTGATGCTCAAAAAGCCATTCCACCCAAGCTTGAAGGGAAAGCCGAGGACAGTCCGGAAATAAAA
GACTATCGGCATGGTTTTGATCTACTAATAGAACAAATAGACAAAACCAAAAAATGGGCGGAAGAAGGAAATATTCAGGA
GGTAAAAAAATCGGTTGGGGAAATAATCAACATTCGTAATACCTATCATAGTAGATATCGTTAA

Upstream 100 bases:

>100_bases
CGCTTTGATATAAAAAATAACTAACTAAATAGAGGGGAGGATTTATCTTCCCCCCCTCTATTTATAAGAGAAGAAAATCA
TAATATAAGAGGTAACGATA

Downstream 100 bases:

>100_bases
AATTTTATTAATTTATAGAGGAGTATTGAATATATCTCCAGACAGGTATTTATATAAAATAATTATATACCCAAGTGACT
TCAAGATGCAGGTAGGCAGC

Product: cytochrome b562

Products: reduced cytochrome b [C]

Alternate protein names: Cytochrome b-562 1 [H]

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALDAQKAIPPKLEGKAEDSPEIK
DYRHGFDLLIEQIDKTKKWAEEGNIQEVKKSVGEIINIRNTYHSRYR

Sequences:

>Translated_127_residues
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALDAQKAIPPKLEGKAEDSPEIK
DYRHGFDLLIEQIDKTKKWAEEGNIQEVKKSVGEIINIRNTYHSRYR
>Mature_127_residues
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALDAQKAIPPKLEGKAEDSPEIK
DYRHGFDLLIEQIDKTKKWAEEGNIQEVKKSVGEIINIRNTYHSRYR

Specific function: Electron-transport protein of unknown function [H]

COG id: COG3783

COG function: function code C; Soluble cytochrome b562

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b562 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009155
- InterPro:   IPR010980 [H]

Pfam domain/function: PF07361 Cytochrom_B562 [H]

EC number: NA

Molecular weight: Translated: 14207; Mature: 14207

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AQKAIPPKLEGKAEDSPEIKDYRHGFDLLIEQIDKTKKWAEEGNIQEVKKSVGEIINIRN
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TYHSRYR
HHHHCCC
>Mature Secondary Structure
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AQKAIPPKLEGKAEDSPEIKDYRHGFDLLIEQIDKTKKWAEEGNIQEVKKSVGEIINIRN
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TYHSRYR
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: cytochrome b oxidized; Electron [C]

Specific reaction: cytochrome b oxidized + 2 Electron = reduced cytochrome b [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10322012; 11586360; 12142430 [H]