Click here to switch to the map view.

The map label for this gene is yfjY [C]

Identifier: 153948236

GI number: 153948236

Start: 913001

End: 913489

Strand: Reverse

Name: yfjY [C]

Synonym: YpsIP31758_0750

Alternate gene names: 153948236

Gene position: 913489-913001 (Counterclockwise)

Preceding gene: 153948288

Following gene: 153948021

Centisome position: 19.34

GC content: 57.06

Gene sequence:

>489_bases
ATGCCACATCAGCCTATGCGTGCTTCACTCCCCACCTTGCCTTTTGCCCAGCAACAGATTATCAGCCAGGCACTGGCGAT
ACTGGAAATCCAACTCCGACACCGGCCCTACACCTTGACCTCACCCGAGGCAGTGAAAGCCTGGCTGCAACTCCATCTTC
GCCCTCAGGGCCGAGAGTGTTTTATGGTGCTCTTTTTGGATAACCGCCACCGCTTGATGGCCAGTGAAACCGTTTCTGTC
GGCACCTTTAATGCCACCACAGTTTACCCCCGCGAAGTCGTTATTCGGGCACTTCACCACCGCTGTGCTGCCGTTGTCAT
CGCCCACAATCATCCGGCCGGAGACCCCACTCCGAGCCAGGCTGACCGCACACTGACTGCCCAGCTGGTTAATGCGCTGA
ACATGGTCGACATCCGCGTACTGGACCACCTGATTATCGGTGAAAGCGAGCCGGTTTCGTTAGCCGAGTTGGGGTGGCTG
CCATGTTAA

Upstream 100 bases:

>100_bases
TTTATGACTGAACACTTTTACAGATTGCGCGAATATGCCTTACAACATCCTGAAAGTCGCGCCATTTTTGACTTGATTGA
CTGACAAGCAGGAGTTCCCC

Downstream 100 bases:

>100_bases
CGACTATCCAACAAACCCACATCCTGACCCTTCGCGGTCGGCAATGCAGTACCGCACATATCACCGAGGACGACAATGCG
CTGCTGTACCGGATATCCCA

Product: RadC family DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MPHQPMRASLPTLPFAQQQIISQALAILEIQLRHRPYTLTSPEAVKAWLQLHLRPQGRECFMVLFLDNRHRLMASETVSV
GTFNATTVYPREVVIRALHHRCAAVVIAHNHPAGDPTPSQADRTLTAQLVNALNMVDIRVLDHLIIGESEPVSLAELGWL
PC

Sequences:

>Translated_162_residues
MPHQPMRASLPTLPFAQQQIISQALAILEIQLRHRPYTLTSPEAVKAWLQLHLRPQGRECFMVLFLDNRHRLMASETVSV
GTFNATTVYPREVVIRALHHRCAAVVIAHNHPAGDPTPSQADRTLTAQLVNALNMVDIRVLDHLIIGESEPVSLAELGWL
PC
>Mature_161_residues
PHQPMRASLPTLPFAQQQIISQALAILEIQLRHRPYTLTSPEAVKAWLQLHLRPQGRECFMVLFLDNRHRLMASETVSVG
TFNATTVYPREVVIRALHHRCAAVVIAHNHPAGDPTPSQADRTLTAQLVNALNMVDIRVLDHLIIGESEPVSLAELGWLP
C

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788997, Length=160, Percent_Identity=46.875, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI2367100, Length=143, Percent_Identity=52.4475524475524, Blast_Score=144, Evalue=3e-36,
Organism=Escherichia coli, GI1788312, Length=145, Percent_Identity=48.9655172413793, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI87082300, Length=148, Percent_Identity=40.5405405405405, Blast_Score=121, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 18115; Mature: 17984

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHQPMRASLPTLPFAQQQIISQALAILEIQLRHRPYTLTSPEAVKAWLQLHLRPQGREC
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEE
FMVLFLDNRHRLMASETVSVGTFNATTVYPREVVIRALHHRCAAVVIAHNHPAGDPTPSQ
EEEEEECCCCEEEECCEEECCCCCCCEECHHHHHHHHHHHHHEEEEEECCCCCCCCCCCC
ADRTLTAQLVNALNMVDIRVLDHLIIGESEPVSLAELGWLPC
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCC
>Mature Secondary Structure 
PHQPMRASLPTLPFAQQQIISQALAILEIQLRHRPYTLTSPEAVKAWLQLHLRPQGREC
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEE
FMVLFLDNRHRLMASETVSVGTFNATTVYPREVVIRALHHRCAAVVIAHNHPAGDPTPSQ
EEEEEECCCCEEEECCEEECCCCCCCEECHHHHHHHHHHHHHEEEEEECCCCCCCCCCCC
ADRTLTAQLVNALNMVDIRVLDHLIIGESEPVSLAELGWLPC
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]