Click here to switch to the map view.

The map label for this gene is yfiO [H]

Identifier: 153948219

GI number: 153948219

Start: 3622944

End: 3623675

Strand: Direct

Name: yfiO [H]

Synonym: YpsIP31758_3215

Alternate gene names: 153948219

Gene position: 3622944-3623675 (Clockwise)

Preceding gene: 153948312

Following gene: 153948353

Centisome position: 76.7

GC content: 48.36

Gene sequence:

>732_bases
ATGACGCGTATGAAATATCTGGTGGCTGCCGCCACGTTGAGCCTGGTGCTGACCGGTTGCTCCAGTAACAAGGACGTGGT
TCCCGATAACCCGCCTTCTGAGCTCTATGCTACCGCACAGCAAAAGTTGCAGGACGGTAACTTTAAGGGAGCTATTACGC
AACTAGAAGCGTTAGATAACCGCTATCCTTTTGGGCCTTACTCCCAGCAGGTTCAGCTTGATTTGATTTATGCGTATTAT
AAATCTGCTGATCTGCCTATGGCGCAAGCCTCAATCGATCGCTTTATGCGCCTCAATCCCACCCATCCTAACATCGATTA
CGTATTATATATGCGTGGTTTGACGGACATGGCTCTGGATGACAGCGCGTTGCAAGGCTTTTTCGGAATTGATCGTTCAG
ACCGCGATCCGCAACATGCTCGGGCCGCATTCCGCGATTTTAACCAGTTGATTCAAAACTATCCGAATAGCCAATACGCA
ACTGATGCGCAAAAACGCCTGGTGTTCCTGAAAGATCGTCTGGCCAAATATGAATTGGCCGTGGCGCAATATTACACTAA
ACGAGGTGCTTACGTCGCGGTTGTTAACCGTGTAGATCAAATGATGAGAGATTATCCAGATACGCAAGCCACTCGTGATG
CCTTGCCGTTGATGGAAAATGCTTATAAGCAGCTGCAACTGAATGCTCAGGCAGATAAAGTCGCGAAGATAATTGCGGCC
AATCCAGCCTAA

Upstream 100 bases:

>100_bases
GGCGATGCCGTTTAATATAATGTGCTATTGTATCTAGATCTTGATCGGGAGCTTAACGGACAGTCTCCCGGAATAACACT
TCGAGGATAATCAAAACGTC

Downstream 100 bases:

>100_bases
CATTATCCCGAAAGATGAAAACACCAACGGCAGCTCAGGCTGCCGTTTTCAATTTAGGTTTTCAACTTTAGTTTTTTAGC
TAAAGATCAACGTTCCCGCT

Product: outer membrane protein assembly complex subunit YfiO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTRMKYLVAAATLSLVLTGCSSNKDVVPDNPPSELYATAQQKLQDGNFKGAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KSADLPMAQASIDRFMRLNPTHPNIDYVLYMRGLTDMALDDSALQGFFGIDRSDRDPQHARAAFRDFNQLIQNYPNSQYA
TDAQKRLVFLKDRLAKYELAVAQYYTKRGAYVAVVNRVDQMMRDYPDTQATRDALPLMENAYKQLQLNAQADKVAKIIAA
NPA

Sequences:

>Translated_243_residues
MTRMKYLVAAATLSLVLTGCSSNKDVVPDNPPSELYATAQQKLQDGNFKGAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KSADLPMAQASIDRFMRLNPTHPNIDYVLYMRGLTDMALDDSALQGFFGIDRSDRDPQHARAAFRDFNQLIQNYPNSQYA
TDAQKRLVFLKDRLAKYELAVAQYYTKRGAYVAVVNRVDQMMRDYPDTQATRDALPLMENAYKQLQLNAQADKVAKIIAA
NPA
>Mature_242_residues
TRMKYLVAAATLSLVLTGCSSNKDVVPDNPPSELYATAQQKLQDGNFKGAITQLEALDNRYPFGPYSQQVQLDLIYAYYK
SADLPMAQASIDRFMRLNPTHPNIDYVLYMRGLTDMALDDSALQGFFGIDRSDRDPQHARAAFRDFNQLIQNYPNSQYAT
DAQKRLVFLKDRLAKYELAVAQYYTKRGAYVAVVNRVDQMMRDYPDTQATRDALPLMENAYKQLQLNAQADKVAKIIAAN
PA

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=243, Percent_Identity=83.5390946502058, Blast_Score=432, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27503; Mature: 27371

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRMKYLVAAATLSLVLTGCSSNKDVVPDNPPSELYATAQQKLQDGNFKGAITQLEALDN
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
RYPFGPYSQQVQLDLIYAYYKSADLPMAQASIDRFMRLNPTHPNIDYVLYMRGLTDMALD
CCCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHCC
DSALQGFFGIDRSDRDPQHARAAFRDFNQLIQNYPNSQYATDAQKRLVFLKDRLAKYELA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
VAQYYTKRGAYVAVVNRVDQMMRDYPDTQATRDALPLMENAYKQLQLNAQADKVAKIIAA
HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
NPA
CCC
>Mature Secondary Structure 
TRMKYLVAAATLSLVLTGCSSNKDVVPDNPPSELYATAQQKLQDGNFKGAITQLEALDN
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
RYPFGPYSQQVQLDLIYAYYKSADLPMAQASIDRFMRLNPTHPNIDYVLYMRGLTDMALD
CCCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHCC
DSALQGFFGIDRSDRDPQHARAAFRDFNQLIQNYPNSQYATDAQKRLVFLKDRLAKYELA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
VAQYYTKRGAYVAVVNRVDQMMRDYPDTQATRDALPLMENAYKQLQLNAQADKVAKIIAA
HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
NPA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]