Click here to switch to the map view.

The map label for this gene is ygjR [H]

Identifier: 153948194

GI number: 153948194

Start: 573730

End: 574725

Strand: Reverse

Name: ygjR [H]

Synonym: YpsIP31758_0497

Alternate gene names: 153948194

Gene position: 574725-573730 (Counterclockwise)

Preceding gene: 153948214

Following gene: 153949304

Centisome position: 12.17

GC content: 47.49

Gene sequence:

>996_bases
ATGATTCGCTTCGCTGTTATTGGCACCAATTGGATCACCGCACGCTTTGTCGATGCTGCCCACGAAAGTGGCAAAATGAA
ACTGGTAGCCGTTTACTCCCGCAAGCTGGACCAGGCTCAGACTTTTGGCGATGATTATCACGTCACTGACTGTTTTGATA
ATTTGGAAGCCTTAGCCGCAAGTGATTTGATTGATGCGGTGTATATCGCCAGCCCGAATGCCTTGCATTATTCTCAAGCC
AAACTCTTCCTTAGCCATAAAAAGCACGTTATTTGCGAAAAGTCGCTAGCATCGAATCTGGCAGAGGTAGAGTCTCTGAT
CGCTTGCGCCCACCAGCATCAGGTGGTGCTCTTTGAGGCCTTTAAAACGGCTTATCTCCCCAACTTTATACAACTACAGC
AAGCGCTACCGCGTGTGGGGAAATTACGTAAAGCCTTTATTAACTTCTGCCAATATTCCTCTCGTTATCAGCGCTATTTG
AACGGCGAAAATCCCAATACCTTTAATCCCGCTTTTTCTAATGGTTCAATCATGGATATTGGCTATTACTGTCTGGCCAG
CGCCCTGGCGTTATGGGGAGAACCCAAATCGGTGTGGGCAAGCGCAAGTTTACTCCCAAGCGGTGTCGATGCTCACGGTA
CGGTCAGTCTGAATTACGGTGATTTTGATGTCATTATCATCCACTCAAAAGTCAGCCAATCGGACATTCCCAGTGAAATT
CAGGGAGAAGATGGCTCGTTATTCATTGAAAGTATTTCTGAATGCTTATCCGTGGCCTTCACGCCAAGAGGAAGCCATTC
ACAAGACCTGACGCAACCACAGCATATTAATACCATGCTGTATGAAGCAGAGGCCTTTGCCCGTTTGGTGGAGAATAATC
AGGTGGATCACGATGGCTTACACCTGTCATTACTGACGTCACGCATTCAAACAGAAATCCGCCGCCAGACGGGTGTTATA
TTCCCGGCAGATACTCAATACCCCGCCGCGAGTTAA

Upstream 100 bases:

>100_bases
CGTAATAATCTGACGGCTCAACCTGTTTTTCTTCTACCTGTTTTTCTTTTACTGGTTTTTCTTCTACGTGCTTTTATCTT
ATAGGAATGGAGTTAACGAT

Downstream 100 bases:

>100_bases
TGTTTCGTTTAAAGACTGTTTGCAGATATCGGTGCAAAACAGCAACCAACAAATAAAAGGTTGCAATAAAGCAAGCGGTT
AATAAAGCATCTAATCACTT

Product: Gfo/Idh/MocA family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAASDLIDAVYIASPNALHYSQA
KLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEAFKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYL
NGENPNTFNPAFSNGSIMDIGYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
QGEDGSLFIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNQVDHDGLHLSLLTSRIQTEIRRQTGVI
FPADTQYPAAS

Sequences:

>Translated_331_residues
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAASDLIDAVYIASPNALHYSQA
KLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEAFKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYL
NGENPNTFNPAFSNGSIMDIGYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
QGEDGSLFIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNQVDHDGLHLSLLTSRIQTEIRRQTGVI
FPADTQYPAAS
>Mature_331_residues
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAASDLIDAVYIASPNALHYSQA
KLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEAFKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYL
NGENPNTFNPAFSNGSIMDIGYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
QGEDGSLFIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNQVDHDGLHLSLLTSRIQTEIRRQTGVI
FPADTQYPAAS

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=346, Percent_Identity=24.2774566473988, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI145693182, Length=325, Percent_Identity=73.2307692307692, Blast_Score=493, Evalue=1e-141,
Organism=Drosophila melanogaster, GI24581117, Length=347, Percent_Identity=26.2247838616715, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24581115, Length=302, Percent_Identity=23.5099337748344, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24584727, Length=310, Percent_Identity=24.5161290322581, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36684; Mature: 36684

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAA
CEEEEEECCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SDLIDAVYIASPNALHYSQAKLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEA
HHHHHHHEECCCCCCCHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCCCEEEHHH
FKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYLNGENPNTFNPAFSNGSIMDI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHH
GYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHH
QGEDGSLFIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNQVDHDGL
CCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
HLSLLTSRIQTEIRRQTGVIFPADTQYPAAS
HHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
>Mature Secondary Structure
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAA
CEEEEEECCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SDLIDAVYIASPNALHYSQAKLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEA
HHHHHHHEECCCCCCCHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCCCEEEHHH
FKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYLNGENPNTFNPAFSNGSIMDI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHH
GYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHH
QGEDGSLFIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNQVDHDGL
CCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
HLSLLTSRIQTEIRRQTGVIFPADTQYPAAS
HHHHHHHHHHHHHHHHCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]