| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153948171
Identifier: 153948171
GI number: 153948171
Start: 610759
End: 612681
Strand: Direct
Name: 153948171
Synonym: YpsIP31758_0519
Alternate gene names: NA
Gene position: 610759-612681 (Clockwise)
Preceding gene: 153948641
Following gene: 153949044
Centisome position: 12.93
GC content: 53.67
Gene sequence:
>1923_bases ATGAGCCGTGACAGGTTATCCAGCCAGTATGACTCGGTGCAGGCGCAGACGGGTATTTTTGCCGGTTCTGGCGGTGTCGA TATCCGGGTGGGGGAGCACACCCAGCTGGATGGCGCGGTGATTGCCAGCACGGCGGCAGCCGATAAAAACACGCTGGATA CCGGCACACTGGGCTTCAGTGATATCAAAAATAAAGCGGTATTCACGGTGGAGCATCAGGGCGGCAGCCTGAGCACCGGT GGCCCGGTGGGGTCAGACCTGCTGAGTAATCTGGGCGGTATGGTGCTCGCGGGGCTGGGCAATGGCGGATATGCCGAAGG CACCACGCAGGCGGCAGTGAGTGAGGGCACGATTACCGTTCGCGACACGGAGAATCAACAGCAGAATATTGATGACCTGA GCCGGGACACCGGGAATGCCAACGGCAGTATCGGGCCGATTTTTGATAAAGAGAAAGAGCAGAACCGGCTGAAAGAAGTG CAGCTGATTGGCGAGATAGGCGGTCAGGCGTTAGATATTGCCTCCACGCAGGGCAAGATAATTGCCACTCACGCGGCAAA CGACAAGATGAAGGCGGTGAAGCCGGAAGATATCGCCGCGGCGGAAAAACAGTGGGAGAAAGCCCATCCGGGCAAGGCGG CCACGGCAGAGGACATCAACCAGCAGATTTACCAGACGGCATATAATCAGGCATTTAACGAGTCAGGATTTGGGACAGGC GGCCCGGTGCAACGCGGTATGCAGGCGGCGACAGCCGCCGTGCAGGGGCTGGCCGGCGGGAATCTGGGTGCGGCCCTGAC GGGTGCCAGTGCGCCGTATCTGGCGGGGGTGATTAAGCAAAGTACAGGCGATAATCCGGCGGCTAACACAATGGCACACG CGGTATTGGGCGCGGTGACGGCCTATGCCAGCGGCAACCATGCGCTGGCGGGTGCGGCTGGCGCGGCCACGGCGGAGTTG ATGGCCCCCACGATTATCAGCGCGCTGGGCTGGGACAAGAACACACTCACCGAAGGTCAGAAACAGGCCGTCAGCGCACT GAGTACATTAGCCGCCGGGCTGGCCGGTGGCCTGACAGGTGACAGCACAGCGGATGCGCTAGCCGGGGGGCAGGCGGGGA AAAATGCGGTAGAGAATAATGCGCTGAGCCTGGCTCTCAAAGGGTGTGGCATTGCTGCACCGTGTCGAAGCCTGATAGCG AAGCAAGTTCTGGAAATCGGCGTTAAAGCGGGTATTACAGGTGTTGTGGCCAAAGAGATCGCAGACAAGATATCGGAAGA CGATCTGGATCATCTTGTTACGCTGAAGATGATGGGCAATGATGAAGTTACCGAAAAATATCTGAATTCGCTTCAGGATA AGTATGTTCCTGCTCATACCGGTGGTGATCAAATAGCTGGATTAGGTCCTTCCAATACTGGGGGGGATCAAATAGCAGAT AATTTGCTAAGTCATACCGGTAGCGACCAATCTACAGGCCAGAGTGCTACTAATACCGGTAATATAGACGGTAAGCCAGA TACTGGCGGGAATAGTACTGTAACGCCAATCCCTGATGGGCCGAATAAAGATGATTTGGCCTATCTGCAATCAGGAAATA AAATTGAAACAACACTTAAACCTGAAAAGAATTGGGAAAGTGCTCGAAATAAAGCATTAGATATTGTTGGTGATTTAGGA GCAGACTCTAAACCTGTTATTGGACGGCTAGAGATAAGTGCTGGGAGTGGAAAAGTTATTGGGCGTCAATCCAACGATGG GAAAGTAGGCTGGCGAGTTGATTATGATCCTGAAAAAGGTACTCATATTAATGTATGGGATTATTCTCAAGGTAAAGGAC CGGGCAAGGCAATAAAAAAGGTCGTACCATTTGAGGGTAATGAACAATCTTTTGAAACGATATTGAGACAGTTAAACAGG TAG
Upstream 100 bases:
>100_bases GGGCTTTTGCTTTTACATATTTTATGACGCGAAGCAGAGCCGTGTCAGCGGCGGTATCAGTGTCCCGGTAGCGGGGGGCG GTGCCGCGGTCAACCTGAGC
Downstream 100 bases:
>100_bases AGAAAATGACTTTATTTGAAGAGTGTAAAGAAGCACTTAGTGCTGATTTTATTATAGTCGAAGGGCGGCTTCAGAAGGAT GCTATTGATATTTTTAATAA
Product: hypothetical protein
Products: NA
Alternate protein names: Filamentous Hemagglutinin; Filamentous Haemagglutinin Outer Membrane Protein; Hemagglutinin-Related Protein; Adhesin/Hemagglutinin; Hemolysin; Adhesin; Filamentous Haemagglutinin; Large Exoprotein Involved In Heme Utilization Or Adhesion; ShlA/HecA/FhaA Exofamily Protein; Adhesin/Hemolysin; Cell Surface Protein; Adhesin HecA Family; Adhesin/Hemagglutinin/Hemolysin; Hemolysin/Hemagglutinin-Like Protein; Contact-Dependent Inhibitor A; FhaB Protein; Adhesin/Haemagluttinin; Filamentous Haemagglutinin Family Protein; Contact-Dependent Inhibition Of Growth Factor CdiA; Exoprotein Adhesin Or Hemolysin; Filamentous Haemagglutinin Adhesin HecA; Adhesin/Hemagglutinin/Hemolysin Fragment; Member Of ShlA/HecA/FhaA Exoprotein Family; Haemolysin-Like Protein; Hemolysin/Hemagglutinin-Like Protein HecA; Haemolysin/Haemagglutinin; AT-2 Family Transporter; Cell Surface Haemagluttinin Protein; Adhesin/Hemolysin Adhesin HecA; Hemagglutinin/Hemolysin-Related Protein; Filamentous Hemagglutinin / Adhesin; Hemagglutinin/Adhesin Repeat-Containing Protein; Hemagglutinin/Hemolysin Family Protein; Hemagglutinin-Like Protein; Hemagglutinin/Hemolysin- Related Exoprotein; Fimbrial Adhesin
Number of amino acids: Translated: 640; Mature: 639
Protein sequence:
>640_residues MSRDRLSSQYDSVQAQTGIFAGSGGVDIRVGEHTQLDGAVIASTAAADKNTLDTGTLGFSDIKNKAVFTVEHQGGSLSTG GPVGSDLLSNLGGMVLAGLGNGGYAEGTTQAAVSEGTITVRDTENQQQNIDDLSRDTGNANGSIGPIFDKEKEQNRLKEV QLIGEIGGQALDIASTQGKIIATHAANDKMKAVKPEDIAAAEKQWEKAHPGKAATAEDINQQIYQTAYNQAFNESGFGTG GPVQRGMQAATAAVQGLAGGNLGAALTGASAPYLAGVIKQSTGDNPAANTMAHAVLGAVTAYASGNHALAGAAGAATAEL MAPTIISALGWDKNTLTEGQKQAVSALSTLAAGLAGGLTGDSTADALAGGQAGKNAVENNALSLALKGCGIAAPCRSLIA KQVLEIGVKAGITGVVAKEIADKISEDDLDHLVTLKMMGNDEVTEKYLNSLQDKYVPAHTGGDQIAGLGPSNTGGDQIAD NLLSHTGSDQSTGQSATNTGNIDGKPDTGGNSTVTPIPDGPNKDDLAYLQSGNKIETTLKPEKNWESARNKALDIVGDLG ADSKPVIGRLEISAGSGKVIGRQSNDGKVGWRVDYDPEKGTHINVWDYSQGKGPGKAIKKVVPFEGNEQSFETILRQLNR
Sequences:
>Translated_640_residues MSRDRLSSQYDSVQAQTGIFAGSGGVDIRVGEHTQLDGAVIASTAAADKNTLDTGTLGFSDIKNKAVFTVEHQGGSLSTG GPVGSDLLSNLGGMVLAGLGNGGYAEGTTQAAVSEGTITVRDTENQQQNIDDLSRDTGNANGSIGPIFDKEKEQNRLKEV QLIGEIGGQALDIASTQGKIIATHAANDKMKAVKPEDIAAAEKQWEKAHPGKAATAEDINQQIYQTAYNQAFNESGFGTG GPVQRGMQAATAAVQGLAGGNLGAALTGASAPYLAGVIKQSTGDNPAANTMAHAVLGAVTAYASGNHALAGAAGAATAEL MAPTIISALGWDKNTLTEGQKQAVSALSTLAAGLAGGLTGDSTADALAGGQAGKNAVENNALSLALKGCGIAAPCRSLIA KQVLEIGVKAGITGVVAKEIADKISEDDLDHLVTLKMMGNDEVTEKYLNSLQDKYVPAHTGGDQIAGLGPSNTGGDQIAD NLLSHTGSDQSTGQSATNTGNIDGKPDTGGNSTVTPIPDGPNKDDLAYLQSGNKIETTLKPEKNWESARNKALDIVGDLG ADSKPVIGRLEISAGSGKVIGRQSNDGKVGWRVDYDPEKGTHINVWDYSQGKGPGKAIKKVVPFEGNEQSFETILRQLNR >Mature_639_residues SRDRLSSQYDSVQAQTGIFAGSGGVDIRVGEHTQLDGAVIASTAAADKNTLDTGTLGFSDIKNKAVFTVEHQGGSLSTGG PVGSDLLSNLGGMVLAGLGNGGYAEGTTQAAVSEGTITVRDTENQQQNIDDLSRDTGNANGSIGPIFDKEKEQNRLKEVQ LIGEIGGQALDIASTQGKIIATHAANDKMKAVKPEDIAAAEKQWEKAHPGKAATAEDINQQIYQTAYNQAFNESGFGTGG PVQRGMQAATAAVQGLAGGNLGAALTGASAPYLAGVIKQSTGDNPAANTMAHAVLGAVTAYASGNHALAGAAGAATAELM APTIISALGWDKNTLTEGQKQAVSALSTLAAGLAGGLTGDSTADALAGGQAGKNAVENNALSLALKGCGIAAPCRSLIAK QVLEIGVKAGITGVVAKEIADKISEDDLDHLVTLKMMGNDEVTEKYLNSLQDKYVPAHTGGDQIAGLGPSNTGGDQIADN LLSHTGSDQSTGQSATNTGNIDGKPDTGGNSTVTPIPDGPNKDDLAYLQSGNKIETTLKPEKNWESARNKALDIVGDLGA DSKPVIGRLEISAGSGKVIGRQSNDGKVGWRVDYDPEKGTHINVWDYSQGKGPGKAIKKVVPFEGNEQSFETILRQLNR
Specific function: Unknown
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65535; Mature: 65404
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRDRLSSQYDSVQAQTGIFAGSGGVDIRVGEHTQLDGAVIASTAAADKNTLDTGTLGFS CCHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCHH DIKNKAVFTVEHQGGSLSTGGPVGSDLLSNLGGMVLAGLGNGGYAEGTTQAAVSEGTITV HHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCEEEE RDTENQQQNIDDLSRDTGNANGSIGPIFDKEKEQNRLKEVQLIGEIGGQALDIASTQGKI EECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCE IATHAANDKMKAVKPEDIAAAEKQWEKAHPGKAATAEDINQQIYQTAYNQAFNESGFGTG EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC GPVQRGMQAATAAVQGLAGGNLGAALTGASAPYLAGVIKQSTGDNPAANTMAHAVLGAVT CHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH AYASGNHALAGAAGAATAELMAPTIISALGWDKNTLTEGQKQAVSALSTLAAGLAGGLTG HHCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC DSTADALAGGQAGKNAVENNALSLALKGCGIAAPCRSLIAKQVLEIGVKAGITGVVAKEI CCHHHHHHCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH ADKISEDDLDHLVTLKMMGNDEVTEKYLNSLQDKYVPAHTGGDQIAGLGPSNTGGDQIAD HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHH NLLSHTGSDQSTGQSATNTGNIDGKPDTGGNSTVTPIPDGPNKDDLAYLQSGNKIETTLK HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHCCCEEEEEEC PEKNWESARNKALDIVGDLGADSKPVIGRLEISAGSGKVIGRQSNDGKVGWRVDYDPEKG CCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCEEEEEECCCCCC THINVWDYSQGKGPGKAIKKVVPFEGNEQSFETILRQLNR CEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure SRDRLSSQYDSVQAQTGIFAGSGGVDIRVGEHTQLDGAVIASTAAADKNTLDTGTLGFS CHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCHH DIKNKAVFTVEHQGGSLSTGGPVGSDLLSNLGGMVLAGLGNGGYAEGTTQAAVSEGTITV HHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCEEEE RDTENQQQNIDDLSRDTGNANGSIGPIFDKEKEQNRLKEVQLIGEIGGQALDIASTQGKI EECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCE IATHAANDKMKAVKPEDIAAAEKQWEKAHPGKAATAEDINQQIYQTAYNQAFNESGFGTG EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC GPVQRGMQAATAAVQGLAGGNLGAALTGASAPYLAGVIKQSTGDNPAANTMAHAVLGAVT CHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH AYASGNHALAGAAGAATAELMAPTIISALGWDKNTLTEGQKQAVSALSTLAAGLAGGLTG HHCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC DSTADALAGGQAGKNAVENNALSLALKGCGIAAPCRSLIAKQVLEIGVKAGITGVVAKEI CCHHHHHHCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH ADKISEDDLDHLVTLKMMGNDEVTEKYLNSLQDKYVPAHTGGDQIAGLGPSNTGGDQIAD HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHH NLLSHTGSDQSTGQSATNTGNIDGKPDTGGNSTVTPIPDGPNKDDLAYLQSGNKIETTLK HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHCCCEEEEEEC PEKNWESARNKALDIVGDLGADSKPVIGRLEISAGSGKVIGRQSNDGKVGWRVDYDPEKG CCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCEEEEEECCCCCC THINVWDYSQGKGPGKAIKKVVPFEGNEQSFETILRQLNR CEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA